Clone BS32358 Report

Search the DGRC for BS32358

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:323
Well:58
Vector:pDNR-Dual
Associated Gene/TranscriptCG5021-RB
Protein status:BS32358.pep: full length peptide match
Sequenced Size:680

Clone Sequence Records

BS32358.complete Sequence

680 bp assembled on 2013-05-22

> BS32358.complete
GAAGTTATCAGTCGACATGGCATCCGCTACGGTGCCGCTGCTCGACGATG
ACACGATACCCTTTGGCGAGGAGGACGAGATGCGGGATCCCAGTCGCGCG
GGTCAGAAATACACGCACCCGTACGTCACCTTCTTCCACCTGTTCTTCAG
GGGCGCCGCCATCCTGATCTATATGTTCTGCGGTTGGTTCAGCGACTCCT
TCATCACCAGCTTCGTTTTCGTGGTGCTCTTCCTGTCCGCCGACTTCTGG
ACGGTGAAGAACATCTCGGGCAGATTGCTGGTGGGTCTCCGCTGGTGGAA
CTACGTCGACGACGATGGCGTATCGCACTGGGTGTTTGAGTCAAAGAACA
GTCGGGTCAACAAGAACGAGCAGCGCATCTTCTGGCTGGGACTCATCCTC
TGTCCCGTCTTCTGGGGCCTCTTCTTCCTGTTCGCCCTATTCGGCCTGAA
GTTCAAATGGCTACTGCTGGTAATGATCGCCATTGCGCTGAATGCCGCCA
ATCTGTATGGCTACGTCAAGTGTAACTATGGCGCCAATAAGGATCTGAAT
TCCGCCGCCACAGACTTTGTGAAAACGCAGTTCTTCAAGAATGCCGTGGA
CATCATGACAAGGCCCAGTGGCGCCCCACCGCCCACAAATGTACGCCCGA
CGGGAGTCGTTTGAAAGCTTTCTAGACCAT

BS32358.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:39:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG5021-RB 648 CG5021-PB 1..648 17..664 3195 99.5 Plus
CG5021-RA 657 CG5021-PA 25..657 32..664 3120 99.5 Plus
CG5021-RD 663 CG5021-PD 1..663 17..664 3010 97.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:39:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG5021-RB 1007 CG5021-RB 140..788 16..664 3200 99.5 Plus
CG5021-RA 933 CG5021-RA 165..797 32..664 3120 99.5 Plus
CG5021-RD 1022 CG5021-RD 140..803 16..664 3015 97.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:39:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8967581..8967895 350..664 1545 99.4 Plus
3L 28110227 3L 8967278..8967516 111..349 1165 99.2 Plus
3L 28110227 3L 8967127..8967211 31..115 425 100 Plus
Blast to na_te.dros performed on 2014-11-28 13:39:42 has no hits.

BS32358.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-05-22 09:59:56 Download gff for BS32358.complete
Subject Subject Range Query Range Percent Splice Strand
CG5021-RB 130..776 17..663 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:11:25 Download gff for BS32358.complete
Subject Subject Range Query Range Percent Splice Strand
CG5021-RB 141..787 17..663 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:32:15 Download gff for BS32358.complete
Subject Subject Range Query Range Percent Splice Strand
CG5021-RB 141..787 17..663 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:32:15 Download gff for BS32358.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8967128..8967210 32..114 100 -> Plus
3L 8967282..8967516 115..349 99 -> Plus
3L 8967581..8967894 350..663 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:11:25 Download gff for BS32358.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8960228..8960310 32..114 100 -> Plus
arm_3L 8960382..8960616 115..349 99 -> Plus
arm_3L 8960681..8960994 350..663 99   Plus

BS32358.pep Sequence

Translation from 16 to 663

> BS32358.pep
MASATVPLLDDDTIPFGEEDEMRDPSRAGQKYTHPYVTFFHLFFRGAAIL
IYMFCGWFSDSFITSFVFVVLFLSADFWTVKNISGRLLVGLRWWNYVDDD
GVSHWVFESKNSRVNKNEQRIFWLGLILCPVFWGLFFLFALFGLKFKWLL
LVMIAIALNAANLYGYVKCNYGANKDLNSAATDFVKTQFFKNAVDIMTRP
SGAPPPTNVRPTGVV*

BS32358.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:17:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG5021-PB 215 CG5021-PB 1..215 1..215 1161 100 Plus
CG5021-PA 218 CG5021-PA 1..218 1..215 1147 98.6 Plus
CG5021-PD 220 CG5021-PD 1..220 1..215 1145 97.7 Plus
CG5021-PC 223 CG5021-PC 1..223 1..215 1131 96.4 Plus