BS32362.complete Sequence
1055 bp assembled on 2013-05-22
> BS32362.complete
GAAGTTATCAGTCGACATGGGCAACGTAATGGCGTCCACCGCAGACGCTG
AGTCCTCTCGTGGGCGTGGACATCTGTCCGCCGGACTACGCTTGCCGGAG
GCACCGCAGTATTCCGGCGGAGTGCCGCCACAGATGGTGGAGGCCTTAAA
GGCGGAAGCTAAAAAGCCCGAATTGACAAATCCCGGAACTCTTGAGGAAC
TGCACAGTCGCTGTCGCGACATCCAGGCCAACACCTTCGAAGGCGCCAAA
ATTATGGTGAACAAGGGTCTGAGCAACCACTTCCAAGTGACCCACACCAT
TAACATGAATTCGGCTGGTCCAAGTGGCTATCGTTTTGGAGCTACCTACG
TGGGTACCAAACAATACGGGCCGACTGAAGCCTTTCCGGTTCTTCTTGGC
GAGATCGATCCGATGGGCAATCTTAATGCAAACGTTATCCATCAACTGAC
CTCTCGTTTGAGGTGCAAGTTTGCCTCGCAGTTCCAGGACTCAAAGCTGG
TGGGCACCCAGCTGACGGGGGACTATCGCGGCAGAGACTACACGCTGACC
CTGACAATGGGCAATCCGGGGTTTTTTACGAGTTCCGGAGTATTTGTGTG
CCAGTACTTGCAGTCCGTCACCAAACGTCTGGCGCTAGGATCGGAGTTCG
CCTATCACTACGGGCCGAATGTGCCCGGACGCCAAGTGGCTGTATTATCA
GCGGTGGGACGTTACGCCTTCGGTGATACCGTGTGGTCTTGCACTTTGGG
ACCCGCCGGATTCCACCTTAGTTACTACCAGAAGGCCAGTGATCAGCTAC
AGATCGGAGTCGAGGTGGAAACGAATATCCGCCAGCAAGAGTCGACGGCC
ACGGTGGCATACCAGATTGATCTGCCCAAGGCAGACCTAGTCTTCCGCGG
CAGTCTCGATTCCAATTGGCTTATTTCCGGAGTCCTTGAGAAAAGACTGC
AGCCGCTACCGTTCTCGTTAGCCATTAGCGGTCGTATGAATCACCAAAAA
AATAGTTTTCGGCTGGGATGTGGCCTCATGATAGGATGAAAGCTTTCTAG
ACCAT
BS32362.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:41:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tomboy40-RA | 1023 | CG8330-PA | 1..1023 | 17..1039 | 5100 | 99.9 | Plus |
| Tom40-RC | 1035 | CG12157-PC | 217..916 | 221..920 | 560 | 72 | Plus |
| Tom40-RB | 1035 | CG12157-PB | 217..916 | 221..920 | 560 | 72 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:41:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tomboy40-RA | 1251 | CG8330-RA | 92..1115 | 17..1040 | 5105 | 99.9 | Plus |
| Tom40-RC | 2395 | CG12157-RC | 639..1338 | 221..920 | 560 | 72 | Plus |
| Tom40-RB | 1861 | CG12157-RB | 511..1210 | 221..920 | 560 | 72 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:41:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6225725..6226748 | 17..1040 | 5105 | 99.9 | Plus |
| X | 23542271 | X | 7737875..7738098 | 221..444 | 400 | 78.6 | Plus |
| X | 23542271 | X | 7738673..7738795 | 773..895 | 225 | 78.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 13:41:46 has no hits.
BS32362.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-05-22 10:00:39 Download gff for
BS32362.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tomboy40-RA | 99..1120 | 17..1038 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:12:27 Download gff for
BS32362.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tomboy40-RA | 92..1113 | 17..1038 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:33:04 Download gff for
BS32362.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tomboy40-RA | 92..1113 | 17..1038 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:33:04 Download gff for
BS32362.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6225725..6226746 | 17..1038 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:12:27 Download gff for
BS32362.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2113230..2114251 | 17..1038 | 99 | | Plus |
BS32362.pep Sequence
Translation from 16 to 1038
> BS32362.pep
MGNVMASTADAESSRGRGHLSAGLRLPEAPQYSGGVPPQMVEALKAEAKK
PELTNPGTLEELHSRCRDIQANTFEGAKIMVNKGLSNHFQVTHTINMNSA
GPSGYRFGATYVGTKQYGPTEAFPVLLGEIDPMGNLNANVIHQLTSRLRC
KFASQFQDSKLVGTQLTGDYRGRDYTLTLTMGNPGFFTSSGVFVCQYLQS
VTKRLALGSEFAYHYGPNVPGRQVAVLSAVGRYAFGDTVWSCTLGPAGFH
LSYYQKASDQLQIGVEVETNIRQQESTATVAYQIDLPKADLVFRGSLDSN
WLISGVLEKRLQPLPFSLAISGRMNHQKNSFRLGCGLMIG*
BS32362.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:18:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tomboy40-PA | 340 | CG8330-PA | 1..340 | 1..340 | 1774 | 100 | Plus |
| Tom40-PC | 344 | CG12157-PC | 1..344 | 1..340 | 1211 | 68.7 | Plus |
| Tom40-PB | 344 | CG12157-PB | 1..344 | 1..340 | 1211 | 68.7 | Plus |
| Tom40-PA | 344 | CG12157-PA | 1..344 | 1..340 | 1211 | 68.7 | Plus |
| CG4520-PB | 320 | CG4520-PB | 33..306 | 55..334 | 179 | 23.8 | Plus |
