BS32369.complete Sequence
2264 bp assembled on 2013-09-16
> BS32369.complete
GAAGTTATCAGTCGACATGGACTTTGAAGATGATGAGGAGGTTGTGCAAC
CGCACTATGCTCAGAAATTCCGGGCTCCCACCGATCCCCTCCTTCTGGCC
ACATATGAGCTTTTTAAGCCCTCTCATCAGACCTTGAACCTATACAGCGA
ACGGAATCGCGAGATTTTTGCGGAGGCCTTTATAGAGGGAAACTTGAACA
CTTTAGTCAATCTGAGCGTAAAGAGTCTGGCCAAGCTGGGCATTCGAGGC
ATATCTCCAACTTTGCAGGCGAGTCCCCAGCTTATGAGGATATTTTACGA
CGCACTGGATGTGGAGCTGCCTTTGAGAGATTGCTATTTGATCGAGGATC
AACGATTTTGGCGACGCGTCGTACTAAGCAAGACTTTGGACAAAACGTTG
CACCTGAAGCGCTGGAACGAGTTCGACTGGAAGGCTGAGGGTGTGAGCCG
GAAGTTTGTGGAGCAGGTTGAATCATGTCCTGTGAACGTGAAGCCGCAGA
GAAGGCTGGCTCAGTTGGCTGAAATTGTTTGGCAGTATGTCAACTCCATG
CACATCCGCAAGCTGCAAGCTCTGCCCGACTATGCCTTCATTAAGCACTT
GGAGAGCGAGCCTGAAGAGGATATATCCTCGGAGTCATCCGACGAGGAGG
AGATATCTAGCGATGAGCCGGATACGGAAATGGACGAGGGCGAGGAGGAG
CACAAGTCTAGTAGTTCCAGCAGCGAGGCAGCTATTACTTTCTGGCGTGC
GGAAACCGAGAACGAGGACACAATTCGCCGGAATGCGCGACATCTGCGCA
ACGCCAACCGCCAGCAGGCTCGGGATGCCATTGCTAGGAAACGGGAGGAT
CGCAAGGAGCGCAAGAGGAAGCGCCAGGAGAAACTGGACGCCTTGAAGAA
TGCGGATCAATCGGGCAAGAAAAAGAAGAAAAAGAAGAAGGAACCGCCCA
TTCGAGACGTGTTCAGCATAAACGTTGCTCCAGAAGAAGGTGATGACGAG
GACACAAAACCGGACAAGCGCAACAAGCAGCTGCTGCTGGAGCGGATCAA
GCGGTATGACTATCCGGAGGACCATTGTCATCACATTGATCTGGGATTTG
TACGATATTTTGAAAATATGATGTCTCTGACGCTGGAGTTTTTGGGACCA
CCTGATGTAAAAGACTATCAAAGCCGTTATATGAAGTTCTCAGACAGTGA
TATGGTTCGTCTTAGCAAAGGTCTGAAATACTTACCGAGCCTCAAGACCT
TCAGGCTTCGAAACAGTCGCCTGAGTATGAAGAAGTTTCGTATCCTGACC
CGTGCCCTTCAGAACTTAGACACCCTTGATGAGGTGGATTTTGGTTATGA
CCAAATGACGGATGAGTGCAGCGAAGGCCTGGCCTATTTGCTAAAGCGCC
CTTTGATGTACCGCAGTATCCAGCTGGAACACAACAAATTGGGCGCCAAT
TGTGCAATTGTGCTGGGCGAGGCGTTGAGCCAATCGCAAGTGGGGGTTTT
GGAGTATCTGGGCCTGGCTCACAATCCGCTTAATGAATTGGCCCTGCACT
CGCTCATAACGTGTATTATCGGAACCCCCCATGTGTGGGCCCTCAACATT
TCGGGGATCAACACCACCCTGGGTTCGTTTTCCCGTGATATAGGAACCCT
CCTGCGCAGCCACACTCCTCTGATGAGCCTCGAAATGGCCGCCATCAACA
TTGGCATCTCGCAAGGGAATCAAATACTGAGATCCCTGGAAAAGAATACC
CGAATCCTATACGCCGACTTCCGGGAATGTGAGCTGAGCTTCGACCAGGA
GTTCGAAGTGGACATGATAGTGCGTCGGAATAACTACATTCATGAAAACC
TCCACCACGGCGAGAATCTGTGTAAGGTGGTCAAGGAGCGCCGCCATCCG
ATTGTCCAGCGAATCGAGGAGGATTTCGCCCGGCGGAAGGGGTGCACGGA
GGTGCGGCCGAAGTTCTCGAGCTCCAGCAAGGAATCCATTCCGGAGGTGG
TCGTTGAGAAGAAGGAGGTCGAGGAGGAGGGCGACATCTGGGCAATGTTG
GCTCGGTGGAACCAGCCGACAGCGCCTGAAGTGAGGGAATCGCACACTTC
AAAGGATTCGCACCCCTCTCAAAATGGAAAGACAGAACCATTTGTTTTCG
AACCCAACAAGTTCGATCTGGACCAGTTCCGGAAGTCTGTCTTTCTGCCA
GGCCCTGGCAATCGCTTTTTCTACCTGCAAAGGAACAAAACTCCCTAAAA
GCTTTCTAGACCAT
BS32369.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:47:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15580-RA | 2232 | CG15580-PA | 1..2232 | 17..2248 | 11130 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:47:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15580-RA | 2371 | CG15580-RA | 47..2278 | 17..2248 | 11130 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:46:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6056209..6057056 | 1173..326 | 4240 | 100 | Minus |
| 3R | 32079331 | 3R | 6055408..6055989 | 1753..1172 | 2895 | 99.8 | Minus |
| 3R | 32079331 | 3R | 6054805..6055299 | 2248..1754 | 2460 | 99.8 | Minus |
| 3R | 32079331 | 3R | 6057180..6057490 | 327..17 | 1555 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:47:00 has no hits.
BS32369.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 11:49:05 Download gff for
BS32369.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15580-RA | 47..2276 | 17..2246 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:34:59 Download gff for
BS32369.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15580-RA | 47..2276 | 17..2246 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:34:59 Download gff for
BS32369.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6054807..6055299 | 1754..2246 | 99 | <- | Minus |
| 3R | 6055408..6055987 | 1174..1753 | 99 | <- | Minus |
| 3R | 6056209..6057054 | 328..1173 | 100 | <- | Minus |
| 3R | 6057180..6057490 | 17..327 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 11:49:05 Download gff for
BS32369.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1880529..1881021 | 1754..2246 | 99 | <- | Minus |
| arm_3R | 1881130..1881709 | 1174..1753 | 99 | <- | Minus |
| arm_3R | 1881931..1882776 | 328..1173 | 100 | <- | Minus |
| arm_3R | 1882902..1883212 | 17..327 | 100 | | Minus |
BS32369.pep Sequence
Translation from 16 to 2247
> BS32369.pep
MDFEDDEEVVQPHYAQKFRAPTDPLLLATYELFKPSHQTLNLYSERNREI
FAEAFIEGNLNTLVNLSVKSLAKLGIRGISPTLQASPQLMRIFYDALDVE
LPLRDCYLIEDQRFWRRVVLSKTLDKTLHLKRWNEFDWKAEGVSRKFVEQ
VESCPVNVKPQRRLAQLAEIVWQYVNSMHIRKLQALPDYAFIKHLESEPE
EDISSESSDEEEISSDEPDTEMDEGEEEHKSSSSSSEAAITFWRAETENE
DTIRRNARHLRNANRQQARDAIARKREDRKERKRKRQEKLDALKNADQSG
KKKKKKKKEPPIRDVFSINVAPEEGDDEDTKPDKRNKQLLLERIKRYDYP
EDHCHHIDLGFVRYFENMMSLTLEFLGPPDVKDYQSRYMKFSDSDMVRLS
KGLKYLPSLKTFRLRNSRLSMKKFRILTRALQNLDTLDEVDFGYDQMTDE
CSEGLAYLLKRPLMYRSIQLEHNKLGANCAIVLGEALSQSQVGVLEYLGL
AHNPLNELALHSLITCIIGTPHVWALNISGINTTLGSFSRDIGTLLRSHT
PLMSLEMAAINIGISQGNQILRSLEKNTRILYADFRECELSFDQEFEVDM
IVRRNNYIHENLHHGENLCKVVKERRHPIVQRIEEDFARRKGCTEVRPKF
SSSSKESIPEVVVEKKEVEEEGDIWAMLARWNQPTAPEVRESHTSKDSHP
SQNGKTEPFVFEPNKFDLDQFRKSVFLPGPGNRFFYLQRNKTP*
BS32369.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:40:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15580-PA | 743 | CG15580-PA | 1..743 | 1..743 | 3868 | 100 | Plus |
| CG18171-PA | 760 | CG18171-PA | 1..756 | 1..741 | 1362 | 41.5 | Plus |
