BS32371.complete Sequence
1592 bp assembled on 2013-05-22
> BS32371.complete
GAAGTTATCAGTCGACATGATTTCAGGAATTATGAAGCTCTCTGACACCA
TGGCCACGCCTATAGAAGAAAAACTCGACCAAAACCTGAAGGTGCGAACT
GGTATGGTGCACGTGAGCGATGGCAAGAGCAGACCAGAACCCCTTCGACT
TAATCTTACCATGGAGTTGCTTTCGCTCCAGAAGCTGGAAGTGGTAACAC
CAAGTAGTTGTCACCCCAATGGACCACCCATGGAATCAAAGGAACGTATG
GTTCAAATTACGCGCCAAAAACAAGGCGGCCTAGGACTGAGCATAAAAGG
TGGCGCCGAGCATAAACTACCCATTTTGATATCGCGTATCTATAAGGATC
AGGCTGCGGACATAACGGGCCAACTATTTGTTGGCGATGCCATCATCAAG
GTCAACGGAGAATACATCACGGCATGTCCTCACGATGATGCTGTCAATAT
ATTGAGAAACGCTGGCGATATTGTTGTACTCACTGTTAAGCATTATCGCG
CAGCCACGCCTTTCCTTCAGAAACAACTGACCAAGGACACGCCCGACTCG
GACAACGATGTCACATGTGCCGAACTGAAGGCTGACGAGGGCTACAAGTC
ATCCGTCAATAGTGGAACCATCAGTCGCAGTTGTAGTCGCCCCATGTCAA
TTTGCTCGGAGCCCGAGAAGCGCTGGACCGACGTGGTTGCCGTACCTCTA
ATGATGGCATATGTGACGAGGTACATCTATGGCACCGACAAGCTGCGACA
AAATGCCTTCGAAGTTCGCGGTCTGAATGGAATTTCCACAGGTGTCATAC
ACTGTGACGAACTGGCCATACTTAGTCAGTGGCTGAAATTGATAACGGAC
AATGTTGTGGGCCTAACGCATTTACAGATGAAGCTATATAATAGAAACTT
TGCTGTGGGCGAGCGCATTGAGTACATGGGCTGGGTGAATGAAGGTGTCA
TTAACAACAATATATCGTGGCAGAGCTACAAGCCCAGGTTTCTACTGCTC
AAAGGCACTGAAGTGATGCTCTTTGAAACGCCACCACTAAATGTGGCTGG
CATTAGTAAGGCTTTGGTGGTCTACAAGGTGTACCAGACCATGTTCCGCA
TTGTCAAGGAATCGGAGACCGTGGATAGTCGTCAGCATTGTTTCCTGCTG
CAAAGTTCGGGTCATGAACCGCGCTATTTGAGCGTGGAAACCCGTCAGGA
GCTTTTGAGAATCGAAAACAGCTGGAATGCGGCCATTGTGACAAGTGTCA
TCAAACTGGGCCGTAAGACCTTTGCCGTGTCGCATCATGGAAAAAGTGGT
GGACTCACGCTGGACTGGCAAGCTGGTTTTTCATTAACCGAAGGAGCCGA
ATCCGCCACAGTTTGGCAGTATAAATTCTCCCAGCTGAGGGGCTCCAGTG
ATGATGGTAAATCGAAGCTGAAGTTGCATTTCCAGGATCACGATAGCCGT
GCAATAGAAACCAAGGAGCTGGAATGCCAAGTCCTGCAAAGTCTGCTGTT
CTGCATGCACGCGTTTCTTACGGCCAAGGTGGCATCGGTGGATCCAGCAT
TTTTGAGCTCAATCCAGCAGACTTAAAAGCTTTCTAGACCAT
BS32371.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:41:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syn2-RE | 1560 | CG4905-PE | 1..1560 | 17..1576 | 7665 | 99.4 | Plus |
| Syn2-RB | 1545 | CG4905-PB | 1..1545 | 32..1576 | 7590 | 99.4 | Plus |
| Syn2-RA | 1545 | CG4905-PA | 1..1545 | 32..1576 | 7590 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:42:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syn2-RE | 1888 | CG4905-RE | 32..1592 | 17..1577 | 7670 | 99.4 | Plus |
| Syn2-RA | 3671 | CG4905-RA | 363..1915 | 25..1577 | 7630 | 99.4 | Plus |
| Syn2-RB | 3475 | CG4905-RB | 169..1719 | 27..1577 | 7620 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:41:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16554966..16555253 | 240..527 | 1410 | 99.3 | Plus |
| 2R | 25286936 | 2R | 16556069..16556293 | 1037..1261 | 1110 | 99.6 | Plus |
| 2R | 25286936 | 2R | 16556353..16556557 | 1262..1466 | 1025 | 100 | Plus |
| 2R | 25286936 | 2R | 16555599..16555789 | 687..877 | 910 | 98.4 | Plus |
| 2R | 25286936 | 2R | 16555319..16555483 | 528..692 | 810 | 99.4 | Plus |
| 2R | 25286936 | 2R | 16555843..16556003 | 876..1036 | 805 | 100 | Plus |
| 2R | 25286936 | 2R | 16554757..16554909 | 90..242 | 720 | 98 | Plus |
| 2R | 25286936 | 2R | 16556617..16556730 | 1464..1577 | 570 | 100 | Plus |
| 2R | 25286936 | 2R | 16554618..16554694 | 17..93 | 385 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 13:41:59 has no hits.
BS32371.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-05-22 10:00:44 Download gff for
BS32371.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syn2-RE | 28..1585 | 17..1574 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:12:34 Download gff for
BS32371.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syn2-RE | 32..1589 | 17..1574 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:33:07 Download gff for
BS32371.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syn2-RE | 32..1589 | 17..1574 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:33:07 Download gff for
BS32371.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16555845..16556003 | 878..1036 | 100 | -> | Plus |
| 2R | 16556069..16556293 | 1037..1261 | 99 | -> | Plus |
| 2R | 16556353..16556556 | 1262..1465 | 100 | -> | Plus |
| 2R | 16554618..16554692 | 17..91 | 100 | -> | Plus |
| 2R | 16554759..16554908 | 92..241 | 98 | -> | Plus |
| 2R | 16554968..16555253 | 242..527 | 99 | -> | Plus |
| 2R | 16555319..16555483 | 528..692 | 99 | -> | Plus |
| 2R | 16555605..16555789 | 693..877 | 98 | -> | Plus |
| 2R | 16556619..16556727 | 1466..1574 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:12:34 Download gff for
BS32371.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12442123..12442197 | 17..91 | 100 | -> | Plus |
| arm_2R | 12442264..12442413 | 92..241 | 98 | -> | Plus |
| arm_2R | 12442473..12442758 | 242..527 | 99 | -> | Plus |
| arm_2R | 12442824..12442988 | 528..692 | 99 | -> | Plus |
| arm_2R | 12443110..12443294 | 693..877 | 98 | -> | Plus |
| arm_2R | 12443350..12443508 | 878..1036 | 100 | -> | Plus |
| arm_2R | 12443574..12443798 | 1037..1261 | 99 | -> | Plus |
| arm_2R | 12443858..12444061 | 1262..1465 | 100 | -> | Plus |
| arm_2R | 12444124..12444232 | 1466..1574 | 100 | | Plus |
BS32371.pep Sequence
Translation from 16 to 1575
> BS32371.pep
MISGIMKLSDTMATPIEEKLDQNLKVRTGMVHVSDGKSRPEPLRLNLTME
LLSLQKLEVVTPSSCHPNGPPMESKERMVQITRQKQGGLGLSIKGGAEHK
LPILISRIYKDQAADITGQLFVGDAIIKVNGEYITACPHDDAVNILRNAG
DIVVLTVKHYRAATPFLQKQLTKDTPDSDNDVTCAELKADEGYKSSVNSG
TISRSCSRPMSICSEPEKRWTDVVAVPLMMAYVTRYIYGTDKLRQNAFEV
RGLNGISTGVIHCDELAILSQWLKLITDNVVGLTHLQMKLYNRNFAVGER
IEYMGWVNEGVINNNISWQSYKPRFLLLKGTEVMLFETPPLNVAGISKAL
VVYKVYQTMFRIVKESETVDSRQHCFLLQSSGHEPRYLSVETRQELLRIE
NSWNAAIVTSVIKLGRKTFAVSHHGKSGGLTLDWQAGFSLTEGAESATVW
QYKFSQLRGSSDDGKSKLKLHFQDHDSRAIETKELECQVLQSLLFCMHAF
LTAKVASVDPAFLSSIQQT*
BS32371.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:19:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syn2-PE | 519 | CG4905-PE | 1..519 | 1..519 | 2676 | 100 | Plus |
| Syn2-PB | 514 | CG4905-PB | 1..514 | 6..519 | 2653 | 100 | Plus |
| Syn2-PA | 514 | CG4905-PA | 1..514 | 6..519 | 2653 | 100 | Plus |
| Syn2-PC | 459 | CG4905-PC | 166..459 | 226..519 | 1517 | 99.7 | Plus |
| Syn2-PC | 459 | CG4905-PC | 1..166 | 6..171 | 846 | 100 | Plus |
| Syn1-PE | 624 | CG7152-PE | 159..623 | 74..508 | 310 | 23.7 | Plus |
