BS32378.complete Sequence
1223 bp assembled on 2013-05-24
> BS32378.complete
GAAGTTATCAGTCGACATGAAACAAATGGCGGCACAAAAAGCCTGGACGG
ATGAGGAGCGTCTGGAGCTGGCGGCCCAGCTGGACGCGGAACTGGATGCG
TTTATCGATGGCCTGGAGAAGAAACGTTACGAGGAGGGCTGGCCGGAGGA
CCGCTGGCAGGAGGAGATGGACAAGCACCCGTTCTTCATGAAACGTGCTC
CTCAGCCAGGGGATGACGTGCATCCGATGTTCGAGGGTCTGCAGAAGCTC
AAGTACGATCCGGAGGAGAACACGCGCGACGAGCTGGCGCTCAACTACAA
GGAGGATGGCAACTTTTACATGAAGCACAAGAAGTTCCGCATGGCAATCT
ACAGCTTTACCGAGGGCATCAAGACCAAGACGGACAATCCCGACGTGCTA
GCCGTTCTCTACAACAACCGCTCGGCGGCTCACTTCTTCATCAAGAACTA
CAGATCCTCGCTGAGCGACGCCCAGCGAGCTCTGTTCTACAAGCCAGACT
ACACAAAGGCCCGCTGGCGGTCGGCACAGTGTGCGTACGAGCTGGAGAGG
TTCGATCTGTGCACCCAGATGTGCGAGGAGCTGCTCGAGGTGGACGTCGA
CAACGAGGTGGCCATCGCGCTGCTGCACAAGAACAAGATGAAGAAGCTCG
AGATAGAACGCAATCAGCGCAAGGAAGCTGCCGAGGCAAAGCGACGGCTT
ACACGCTTCCACAGACTCCGCGACGCCATCGAGCAGCGCGCCATTAAGTT
TGACGATCAAAAAGTTGGCAAAAAGGACGTCCTCAGTGAGGAGCTCCTTT
ATCCAAAGTTTCTGCCTTTGGAGGACCATCCGGTGCACCTAGACGAGGAC
GGCAGCACGCTGATCTGGCCGGCTGCGTTCTCCTACCCCGAGTTCCTGTA
CAGCGACTTTTATCAGCAGCTGCCGGAGACCACCACCATGCGGGATTGCC
TGGCGACGCTGCTCACCGAAAAGCTGCCATACGACAAGGCACACAACTAC
CGCCTGGGTAACGTGCACGTTTACTACGAGAACCGCAAGGTGGGCTGTGT
CCACAAGGTGGACGAGGAGAAGCAGCTGGCCGAGATAATCGCCGAAAAGG
GGTTTTTCGTTTCCGGTGGCGCTCTGCTCTTCTATGTGGTGCACAAGGAT
TCGCGAGTGGAACAGGAGTTTATAAACGAACGGCGACGACCCATGGTTTA
CAGTTAAAAGCTTTCTAGACCAT
BS32378.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:44:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dpit47-RB | 1191 | CG3189-PB | 1..1191 | 17..1207 | 5940 | 99.9 | Plus |
| Dpit47-RA | 1191 | CG3189-PA | 1..1191 | 17..1207 | 5940 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:44:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dpit47-RB | 1284 | CG3189-RB | 58..1248 | 17..1207 | 5940 | 99.9 | Plus |
| Dpit47-RA | 1417 | CG3189-RA | 191..1381 | 17..1207 | 5940 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:44:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6661299..6661928 | 646..17 | 3150 | 100 | Minus |
| 2R | 25286936 | 2R | 6660681..6661243 | 1207..645 | 2800 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:44:28 has no hits.
BS32378.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-05-24 12:17:15 Download gff for
BS32378.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dpit47-RA | 191..1379 | 17..1205 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:13:39 Download gff for
BS32378.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dpit47-RA | 191..1379 | 17..1205 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:34:03 Download gff for
BS32378.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dpit47-RA | 191..1379 | 17..1205 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:34:03 Download gff for
BS32378.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6660683..6661241 | 647..1205 | 99 | <- | Minus |
| 2R | 6661299..6661928 | 17..646 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:13:39 Download gff for
BS32378.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2548188..2548746 | 647..1205 | 99 | <- | Minus |
| arm_2R | 2548804..2549433 | 17..646 | 100 | | Minus |
BS32378.pep Sequence
Translation from 16 to 1206
> BS32378.pep
MKQMAAQKAWTDEERLELAAQLDAELDAFIDGLEKKRYEEGWPEDRWQEE
MDKHPFFMKRAPQPGDDVHPMFEGLQKLKYDPEENTRDELALNYKEDGNF
YMKHKKFRMAIYSFTEGIKTKTDNPDVLAVLYNNRSAAHFFIKNYRSSLS
DAQRALFYKPDYTKARWRSAQCAYELERFDLCTQMCEELLEVDVDNEVAI
ALLHKNKMKKLEIERNQRKEAAEAKRRLTRFHRLRDAIEQRAIKFDDQKV
GKKDVLSEELLYPKFLPLEDHPVHLDEDGSTLIWPAAFSYPEFLYSDFYQ
QLPETTTMRDCLATLLTEKLPYDKAHNYRLGNVHVYYENRKVGCVHKVDE
EKQLAEIIAEKGFFVSGGALLFYVVHKDSRVEQEFINERRRPMVYS*
BS32378.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:19:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dpit47-PB | 396 | CG3189-PB | 1..396 | 1..396 | 2101 | 100 | Plus |
| Dpit47-PA | 396 | CG3189-PA | 1..396 | 1..396 | 2101 | 100 | Plus |
