BS32379.complete Sequence
968 bp assembled on 2013-05-24
> BS32379.complete
GAAGTTATCAGTCGACATGAAACTGACCGCTTTCCTCGAGGCTTCGTTTC
TGCTAATCTGCTGGTCTCAAGCTGTCAGCAGCCATGTCTTTGGCTACTCC
GAGCCCAACCAGCGACGCTGGGCCCGCCATCATGGTCACTGTGCGGGAAA
GACCCAGTCCCCGATTGCCATCACCACCAGCCGGACAACGGCCATTCATA
TGCCGGCGGTGGACATGATTGGCTATCACAACCTGCTGCCCTACCCACTG
AAAATGATCAACAATGGACACACGGTTTCCATCACCATACCTAAGGTCAA
TGTGACTGAGGTGGGCGAGGATTTCCTACCCTACATCCGGGGCGCCAAGC
TGCCCGGTGAGTTCGAGGTGGAGGGCCTCCACTTCCACTGGGGCGACAAG
AACAACCGGGGATCCGAGCATGTCATTAACGACATCCGCTACACCATGGA
GATGCACATTGTGCACCGGAACAAGAAGTACGCAACCATTGGCGAGGCTC
TTAATCATCCGGATGGTGCCGCCGTCCTGGGTTTCTTCTTCAATCTCGAC
GAGGATGAGGGTGCTGGCCTGGTGACCATTAACCGACATTTGCATCTGAT
TGCCGATGCCAATCAGGAGGCCACGCTGAACGTCACTTTCTCGCTCTCCT
CGCTGATTGCTGGCGTGGATGTGGACAAGTTCTACACGTACAAGGGTTCC
CTGACCACGCCGCCCTGTTCGGAGGCCGTCACCTGGATACTGTTTCCCGA
TCCCATACCCATTTCACCCAAGCAGATCTCCCGATTCCGTCAGCTGTCGG
ACACGCAGGATGGTGCGTTGGTGGACAATTTCAGGACCCTGCAGCCGGTG
GGCAATCGCAGGATCTTCGCGCGCACTGGACACGTGCGTCACACCTCGAT
TGCCACATTGAAGCACGAGGGCGAATATCTCAAGTACGACTGGTTCTACT
GAAAGCTTTCTAGACCAT
BS32379.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:44:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6074-RA | 936 | CG6074-PA | 1..936 | 17..952 | 4635 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:44:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6074-RA | 1130 | CG6074-RA | 60..997 | 15..952 | 4645 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:44:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27103793..27104062 | 544..275 | 1320 | 99.3 | Minus |
3R | 32079331 | 3R | 27103121..27103378 | 952..695 | 1290 | 100 | Minus |
3R | 32079331 | 3R | 27103575..27103727 | 697..545 | 765 | 100 | Minus |
3R | 32079331 | 3R | 27104314..27104428 | 184..70 | 560 | 99.1 | Minus |
3R | 32079331 | 3R | 27104156..27104247 | 275..184 | 460 | 100 | Minus |
3R | 32079331 | 3R | 27106069..27106125 | 71..15 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:44:32 has no hits.
BS32379.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-05-24 12:17:17 Download gff for
BS32379.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6074-RA | 62..996 | 17..951 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:13:41 Download gff for
BS32379.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6074-RA | 62..996 | 17..951 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:34:05 Download gff for
BS32379.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6074-RA | 62..996 | 17..951 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:34:05 Download gff for
BS32379.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27104156..27104246 | 185..275 | 100 | <- | Minus |
3R | 27104314..27104426 | 72..184 | 99 | <- | Minus |
3R | 27106069..27106123 | 17..71 | 100 | | Minus |
3R | 27103577..27103727 | 545..695 | 100 | <- | Minus |
3R | 27103793..27104061 | 276..544 | 99 | <- | Minus |
3R | 27103122..27103377 | 696..951 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:13:41 Download gff for
BS32379.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22929878..22929968 | 185..275 | 100 | <- | Minus |
arm_3R | 22930036..22930148 | 72..184 | 99 | <- | Minus |
arm_3R | 22931791..22931845 | 17..71 | 100 | | Minus |
arm_3R | 22929299..22929449 | 545..695 | 100 | <- | Minus |
arm_3R | 22929515..22929783 | 276..544 | 99 | <- | Minus |
arm_3R | 22928844..22929099 | 696..951 | 100 | <- | Minus |
BS32379.pep Sequence
Translation from 16 to 951
> BS32379.pep
MKLTAFLEASFLLICWSQAVSSHVFGYSEPNQRRWARHHGHCAGKTQSPI
AITTSRTTAIHMPAVDMIGYHNLLPYPLKMINNGHTVSITIPKVNVTEVG
EDFLPYIRGAKLPGEFEVEGLHFHWGDKNNRGSEHVINDIRYTMEMHIVH
RNKKYATIGEALNHPDGAAVLGFFFNLDEDEGAGLVTINRHLHLIADANQ
EATLNVTFSLSSLIAGVDVDKFYTYKGSLTTPPCSEAVTWILFPDPIPIS
PKQISRFRQLSDTQDGALVDNFRTLQPVGNRRIFARTGHVRHTSIATLKH
EGEYLKYDWFY*
BS32379.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:19:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6074-PA | 311 | CG6074-PA | 1..311 | 1..311 | 1667 | 100 | Plus |
CG18673-PC | 302 | CG18673-PC | 54..300 | 40..287 | 485 | 40.1 | Plus |
CG3669-PB | 298 | CG3669-PB | 33..288 | 29..288 | 473 | 37.5 | Plus |
CG5379-PB | 303 | CG5379-PB | 6..286 | 3..286 | 457 | 36.1 | Plus |
CG5379-PA | 303 | CG5379-PA | 6..286 | 3..286 | 457 | 36.1 | Plus |