BS32380.complete Sequence
1079 bp assembled on 2013-05-24
> BS32380.complete
GAAGTTATCAGTCGACATGTTGGCCTCCGCCTGGCGCAGCGTGGCCACCT
CCGTGGAGACCCAGTTGACGGCCACCTACTTCCGAGGTTCGTCCAGCAAT
CCGACACTGCTCCTGCGTTCCTGGCGGACGATTCCTCGAGCGGATGCCCC
TGGTTTCGGAGCGATTCGGCGGCGGTTTCTGGCTGTGCCCGTCATCTGTC
CAAGTCTCGTCAAGCTGCAAAAACTACGAAAAGTCGGCTTCAGAGGCATG
CACAGCACATTGGAGGACGTGCAGCTGGAGGGCATGGAGATCAAGATCCT
GCCGGCCCTGCAGGACAACTATATGTATCTGATTGTAGACACGAAGACGC
GCGAGGCGGCCGTGGTGGATCCCGTGGAGCCGGAGCTGGTCATTAAGACG
GTGCAGGAGCAGCAGCTGACCCTCAGCAAGGTGCTGACCACGCACCATCA
CTGGGACCACGCCGGTGGCAATGAAAAGCTGCTCAAGCTGTGGGAGAAGG
AGCTGGACGTGTATGGCGGCGATGACCGCATCGGGGCATTGAACAAAAAG
GTTCAGCAGGACGACACCTTCACCATTGGTGGTCTGCATGTCAAGTGCTT
GTCCACGCCGTGCCACACTACCGGCCACATCTGCTACCACATCACCGCGC
AGCAGGGCAGCGGCGAGGGAGCCGTCTTCACCGGCGACACCCTCTTCCAG
GGCGGATGCGGCCGCTTCTTCGAGGGCACTCCCGAGGAAATGTACGAGGC
GCTGTGCACAAAGCTCTCCGCCTTGCCGGACGCCACAAAGGTGTTCTGTG
GCCACGAGTACACGCTGCAGAACATGAGCTTCGCCCGTCACGTCGAGCCC
GACAACGAGGTCATCCAGCAGAGGATCGAGTGGGCCAAGCACCGGCGCGC
CTCCCAGGATCCCACTGTGCCCTCCACCATTGGCGAGGAGAAGTCCTGGA
ACCCCTTTATGCGCGTTCACGAAGCCACCGTGCAGAAGCACGCTGGCGGA
GCCACCGATCCCGTCGTCACCATGGGCAAGCTGCGCAAGGAAAAGGACAC
CTTCAAAGCCTGAAAGCTTTCTAGACCAT
BS32380.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:44:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4365-RC | 1047 | CG4365-PC | 1..1047 | 17..1063 | 5205 | 99.8 | Plus |
| CG4365-RA | 918 | CG4365-PA | 71..918 | 216..1063 | 4225 | 99.9 | Plus |
| CG4365-RB | 816 | CG4365-PB | 1..816 | 248..1063 | 4065 | 99.9 | Plus |
| CG4365-RA | 918 | CG4365-PA | 1..70 | 17..86 | 350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:44:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4365-RC | 1231 | CG4365-RC | 109..1155 | 17..1063 | 5205 | 99.8 | Plus |
| CG4365-RA | 1092 | CG4365-RA | 154..1001 | 216..1063 | 4225 | 99.9 | Plus |
| CG4365-RB | 1013 | CG4365-RB | 75..922 | 216..1063 | 4225 | 99.9 | Plus |
| CG4365-RA | 1092 | CG4365-RA | 84..153 | 17..86 | 350 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:44:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20799143..20799990 | 216..1063 | 4225 | 99.9 | Plus |
| 3L | 28110227 | 3L | 20798790..20798988 | 17..215 | 980 | 99.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 13:44:35 has no hits.
BS32380.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-05-24 12:17:19 Download gff for
BS32380.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4365-RC | 89..1129 | 22..1062 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:13:44 Download gff for
BS32380.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4365-RC | 114..1154 | 22..1062 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:34:07 Download gff for
BS32380.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4365-RC | 114..1154 | 22..1062 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:34:07 Download gff for
BS32380.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20798795..20798988 | 22..215 | 99 | -> | Plus |
| 3L | 20799143..20799989 | 216..1062 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:13:44 Download gff for
BS32380.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20791895..20792088 | 22..215 | 99 | -> | Plus |
| arm_3L | 20792243..20793089 | 216..1062 | 99 | | Plus |
BS32380.pep Sequence
Translation from 16 to 1062
> BS32380.pep
MLASAWRSVATSVETQLTATYFRGSSSNPTLLLRSWRTIPRADAPGFGAI
RRRFLAVPVICPSLVKLQKLRKVGFRGMHSTLEDVQLEGMEIKILPALQD
NYMYLIVDTKTREAAVVDPVEPELVIKTVQEQQLTLSKVLTTHHHWDHAG
GNEKLLKLWEKELDVYGGDDRIGALNKKVQQDDTFTIGGLHVKCLSTPCH
TTGHICYHITAQQGSGEGAVFTGDTLFQGGCGRFFEGTPEEMYEALCTKL
SALPDATKVFCGHEYTLQNMSFARHVEPDNEVIQQRIEWAKHRRASQDPT
VPSTIGEEKSWNPFMRVHEATVQKHAGGATDPVVTMGKLRKEKDTFKA*
BS32380.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:20:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4365-PC | 348 | CG4365-PC | 1..348 | 1..348 | 1843 | 100 | Plus |
| CG4365-PA | 305 | CG4365-PA | 1..305 | 1..348 | 1564 | 87.4 | Plus |
| CG4365-PB | 271 | CG4365-PB | 1..271 | 78..348 | 1453 | 100 | Plus |
| CG30022-PB | 279 | CG30022-PB | 61..221 | 102..265 | 209 | 32.1 | Plus |
