BS32382.complete Sequence
2057 bp assembled on 2013-09-16
> BS32382.complete
GAAGTTATCAGTCGACATGGAAACGGAGAATAATGAAGAACCTCAGATTG
ATTTGTTGGAGGAAAACGAAGCGGTACGAAGCTTGGCTGATGAAGTTCTC
TCGAGATTTTCAGGCGATAGTAAAAAGTCTGTTTCGGTGAATATTTCAAT
GGTTTCTATGTCATCAAATGAAAACAGTGAAGAAAGACTGAAAATCATTA
GAAAGGAGGAAAGAAAATTGGCAATAAAGGACATCATGAATCGACTAAAG
GAGCGTGACGCGGAGGAGATGAAAATGAAGAAGTCCGGCGAACAGGAGGG
GGACCAAAGGGAAGACGAAATGGCCAGCAAGTCACAAGACAGTATTCAAC
GGCACATGTCCATTTCACAAGTGGAGGAGCAGGACGATGAAACATTGCTG
TGGACCAAGCTGGGTGAGGATATCGACAGTGACAACAGAAGAACCACGGA
TATTGCTCCCGCAGCAGACACTTTGGACGCAGTTAATGCCGAGGACGAAG
ACATGCTCGATCTCATCGAAACCCCATCGGAATCTGATTCAGAAGCACCA
GTGACCGAGAGGTCCAAGAGCATAGATCCCATGAAAGTGGCCGTTAAATC
TTTAATGCTGGTGCCCAGTCTGTCGGATATTTCGCTGCCAAGTGCGCCGC
CCACGTCAAGAAAGTCTTCCCATTCTATTAAATCGAACAGATCATTAATT
TTTAAAAGTTCCCCAACCGATGGCAATTCAAGCTTCGATACCGAAGAGTC
GGAAGAAGAATCCACCATTGGCCCCATTGATCCGCGTACTCCAATGGATC
AATTGTACGACTCACTATCGATTTGCGAGTCTTTGGCACCCATAAAAGAC
GAATTTTCAAGAACAACAGCTTTGGAAAAAGAAAGAAATGATTACATGGG
CTTTGAACAGTTGTTTACAGTAACAACGGAACACCTTGAAACGGACGAAA
TCGATGTGGCAGCCCAACTGAGGACTATAGAGACAAGCCAGGTTATTTCT
GAATTTATAAACCATTTGATACATAAGGTAGTCATGCCAGAGCATCGGGG
TACTGAGGAATATATTCGGGTGCGACTGGACAAAGAAAAGCTGCTGGTCG
CTCTGCAGAATGAGGTGCATGATTACACAAGTGTAAGGGATCATAACAAA
CAGCTGGAGGAGCGAATGGTAGATTACTTCCGACGCACGAAAAACTTCCG
ATACTTTGACCGCCTAACGCCGAACGCCGAGTCAACCTACTCCCGTCGCC
TTGATCACGCCCTGACCTATCTGTCCTATGGTCAAGAGCGCCTCATCAGG
GTAAGGGAGAAATATGGCATTCTAATGACCACTGCGTTTTTGGACCTCGC
CAACGCCATGAACATCGTTCTCAGCACGGAGCATCATCTCGAGCAGACGT
TAAAACGCATCCTGGTTCGTCCGGACGCCGAGACCGATTTCCTCAAGCGC
CTGGTTGCCCGCGAACTCCGACTTATGGCCGACCATCGGAATCAAATTAG
CGATGCCCGGCTGTTGCTCATGTCGCAGAAACACACCTTGGCCCGCATCT
TAGAAAAAATAAGAGATGTAGAAACGGTTTGCGACGGTGTGAGCTTGAAT
GACTTTATTTCCGTGCAAAACAAAACGATCGGCCTAGAAAAGAAGATTGA
AGAGCGAAATATTGAATTAAAAAGACAGCGCAGGCTCTACCACACCGAAC
TGCATATGACTAAGCACAATCGAGAGAAGTCCCACGAGCTTAAGAACAAA
ATTCACGTTCTTAAAGATAACCTGCTGGAAAAGCACAAGTTGAAAAATAA
ACTAAAATCCGAGCTGTGTCGCCGAAAACTGGAGCACAAGGCTATTAGGC
GCCGGATGAGAGATTTGACATGCCAGGGTGGTATCCTGGCTATGCCCGCA
TTGATGTATGACTACGATCGAACTGTCGCCTATGTTCGTGAAAAGGAGAA
AATGGTCTCGAGTCTCCGGGAAACCCTAAAATCACTTACCAATCAGCTGC
AAAGTTTGATGTCACCTCGAAAAAAGAGCTCGATTATTTAAAAGCTTTCT
AGACCAT
BS32382.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:47:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4712-RB | 2025 | CG4712-PB | 1..2025 | 17..2041 | 10125 | 100 | Plus |
| CG4712-RA | 1944 | CG4712-PA | 104..1944 | 201..2041 | 9205 | 100 | Plus |
| CG4712-RA | 1944 | CG4712-PA | 1..104 | 33..136 | 520 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:48:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4712-RB | 2251 | CG4712-RB | 178..2202 | 17..2041 | 10125 | 100 | Plus |
| CG4712-RA | 2186 | CG4712-RA | 297..2137 | 201..2041 | 9205 | 100 | Plus |
| CG4712-RA | 2186 | CG4712-RA | 178..297 | 17..136 | 600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:47:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13250009..13251547 | 1555..17 | 7695 | 100 | Minus |
| 2R | 25286936 | 2R | 13248943..13249333 | 2041..1651 | 1955 | 100 | Minus |
| 2R | 25286936 | 2R | 13249401..13249497 | 1652..1556 | 485 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:47:58 has no hits.
BS32382.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 11:49:30 Download gff for
BS32382.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4712-RB | 163..2185 | 17..2039 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:35:20 Download gff for
BS32382.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4712-RB | 178..2200 | 17..2039 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:35:20 Download gff for
BS32382.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13250009..13251547 | 17..1555 | 100 | | Minus |
| 2R | 13248945..13249331 | 1653..2039 | 100 | <- | Minus |
| 2R | 13249401..13249497 | 1556..1652 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 11:49:30 Download gff for
BS32382.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9136450..9136836 | 1653..2039 | 100 | <- | Minus |
| arm_2R | 9136906..9137002 | 1556..1652 | 100 | <- | Minus |
| arm_2R | 9137514..9139052 | 17..1555 | 100 | | Minus |
BS32382.pep Sequence
Translation from 16 to 2040
> BS32382.pep
METENNEEPQIDLLEENEAVRSLADEVLSRFSGDSKKSVSVNISMVSMSS
NENSEERLKIIRKEERKLAIKDIMNRLKERDAEEMKMKKSGEQEGDQRED
EMASKSQDSIQRHMSISQVEEQDDETLLWTKLGEDIDSDNRRTTDIAPAA
DTLDAVNAEDEDMLDLIETPSESDSEAPVTERSKSIDPMKVAVKSLMLVP
SLSDISLPSAPPTSRKSSHSIKSNRSLIFKSSPTDGNSSFDTEESEEEST
IGPIDPRTPMDQLYDSLSICESLAPIKDEFSRTTALEKERNDYMGFEQLF
TVTTEHLETDEIDVAAQLRTIETSQVISEFINHLIHKVVMPEHRGTEEYI
RVRLDKEKLLVALQNEVHDYTSVRDHNKQLEERMVDYFRRTKNFRYFDRL
TPNAESTYSRRLDHALTYLSYGQERLIRVREKYGILMTTAFLDLANAMNI
VLSTEHHLEQTLKRILVRPDAETDFLKRLVARELRLMADHRNQISDARLL
LMSQKHTLARILEKIRDVETVCDGVSLNDFISVQNKTIGLEKKIEERNIE
LKRQRRLYHTELHMTKHNREKSHELKNKIHVLKDNLLEKHKLKNKLKSEL
CRRKLEHKAIRRRMRDLTCQGGILAMPALMYDYDRTVAYVREKEKMVSSL
RETLKSLTNQLQSLMSPRKKSSII*
BS32382.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:41:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4712-PB | 674 | CG4712-PB | 1..674 | 1..674 | 3379 | 100 | Plus |
| CG4712-PA | 647 | CG4712-PA | 33..647 | 60..674 | 3090 | 99.7 | Plus |
| CG4714-PA | 732 | CG4714-PA | 104..724 | 49..661 | 715 | 32.2 | Plus |
| CG31231-PA | 679 | CG31231-PA | 51..672 | 28..672 | 428 | 25 | Plus |
| CG31784-PC | 763 | CG31784-PC | 212..728 | 134..664 | 319 | 25.4 | Plus |
