BS32383.complete Sequence
2132 bp assembled on 2013-09-16
> BS32383.complete
GAAGTTATCAGTCGACATGAGTGGCCATCCATCGGGAATCCGGAAACATG
ATGATAATGAGTGTAGTGGCCCACGACCACCAGTACCCGGAGAAGAGAGC
CGTGTTAAAAAGATGACCGAAGGGGTAGCAGATACCTCGAAGAATTCGTC
GCCATCCTACCTGAACTGGGCCCGGACGCTGAACCACCTGCTGGAGGACC
GCGATGGGGTCGAGCTCTTCAAGAAGTACGTGGAGGAGGAGGCGCCCGCC
TACAACGACCACCTCAACTTCTACTTCGCCTGCGAGGGCCTCAAGCAGCA
GACGGATCCGGAGAAGATCAAGCAGATAATCGGAGCCATCTACAGATTCC
TGCGCAAGAGTCAGCTGTCCATCTCCGATGACCTGCGCGCCCAGATCAAG
GCCATCAAGACGAATCCCGAGATCCCGCTCAGCCCACACATATTCGATCC
CATGCAGCGCCATGTGGAGGTCACCATCCGCGACAACATCTACCCCACGT
TTCTCTGCTCCGAGATGTACATCCTCTACATCCAGCAGATGTCCGCCCAG
CAGGAGCGCTGCACCAGCAGCGGCGCCACGGGATCGGGAAGTGCCGGGAG
TAGTGGCAGCGGCGGCAGCAGCCTAGCGGGCGCCTGTGCCCTGCCACCGA
CCACCGCGTCCGGCAAGCAGCAGCTCCCGCAGCTGGTGCCGCCCGGTGCC
TTCATCAACCTGCCGGTGAGCAGCGTGAGCGGCCCGCCAGCTGGCACGTG
CAGTGCCAGCGGCAGTGTGTACGGTCCCTCGACTTCGGCCAGCTCCAGCG
GCTCAATAAGCGCCACCGACACACTGCCCCGCAGCTCCACGCTGCCCACG
CTGCACGAGGACTCGGTGCTGTCGCTCTGCGACGACTTCGAGAAGGTGCA
GATGCAGGAAGGCGGCGGATCCCTCGGCTCTGGATCTGTGGGCGCGGGTG
CGCGAGCGCCCGACTACCCGATTCGCCTCACGCGGGACCTACTAATAGCA
ACTCAGAAAAGAAGACTGGAAATCCGACCTCCTGGGGACGGTCGCCCGTA
CATCCAACGCAGACACAGCTCCACGGAGAGCAAGGCGATCCGCCAGAGCG
CGATGGCAAACAAGGAGACCAACACCTTTCAGGTGATACCTCGCACACAA
CGACTACATTCGAACGAGCACAGACCACTGAAGGAAGAGGAGCTGGTGTC
CTTGCTGATACCCAAGTTGGAGGAAGTGAAGCGAAAGCGAGACCTGGAGG
AAAGAGCTCGCGAGAGAAATCCCGGTGCTGCTCTGCTTACCAACGAAAGA
TCCAGTGCCAGCGATCGAGCCTTCGCCGAGGCGATACGAGAGAAGTTTGC
ACTGGACGAAGACAACGACCAAGACATTCTGGACCAGCATGTGTCGCGGG
TGTGGAAGGACCAAACGCCGCACCGCTCGCCGGGAACGATGTCGCCCTGC
CCACCCATACCGTCGCGCCGACGTACAGCCACCCACGATTCCGGAATGGT
CAGCGATGGCGCCATGAGTCTAAGCGGACACTCAATGAAGCACTCAAAGT
CCATGCCGGATCACAGTTCCTGCTCGAGGAAGTTGACAAACAAATGGCCT
TCCATGAACACAGACAGTGGCATTAGCATGTTCTCGGCCGACACTGTTAC
CAAGTACAAAGATGCGAGTTCTCGATCTGGCTCTAGCACGGCCTCGAAAC
TGGAGGAGGCGAAACGAAGACTGGAAGACGAGCCGCGGCGCTCTCGTCGA
TACGCCCAACCGCCGATGCAGCACCTGTCGCAACAGCCACTGGCCTCCTT
CAGCAGCAGCAGCAGTGGCGGCAGCATCAGCCTGCCACACCAGCCACCGC
CTCTGCCGGCCAAGCCGCCGGAGACGATCGTGGTGTTCTCGTTCTGCGAG
GAGCCAGTGCCGTACAGGATAAAAATACCCGGTACTCAGCCAACCCTGCG
TCAGTTTAAGGACTATCTGCCCAGAAGAGGTCACTTTAGGTTCTTCTTCA
AGACGCACTGCGAGGACCCGGACAGTCCAGTGATTCAGGAAGAGATTGTT
AACGACTCCGACATACTGCCGCTATTCGGAGACAAAGCGATGGGTCTTGT
CAAGCCATCCGATTAAAAGCTTTCTAGACCAT
BS32383.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:48:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Axn-RD | 2100 | CG7926-PD | 1..2100 | 17..2116 | 10410 | 99.7 | Plus |
| Axn-RF | 2082 | CG7926-PF | 1..2082 | 17..2116 | 10105 | 98.9 | Plus |
| Axn-RB | 2238 | CG7926-PB | 1158..2238 | 1036..2116 | 5405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:48:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Axn-RD | 4553 | CG7926-RD | 1456..3556 | 16..2116 | 10415 | 99.7 | Plus |
| Axn-RF | 4535 | CG7926-RF | 1456..3538 | 16..2116 | 10110 | 98.9 | Plus |
| Axn-RE | 3578 | CG7926-RE | 805..2581 | 340..2116 | 8810 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:48:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30031417..30032113 | 340..1036 | 3410 | 99.3 | Plus |
| 3R | 32079331 | 3R | 30033803..30034127 | 1667..1991 | 1625 | 100 | Plus |
| 3R | 32079331 | 3R | 30033279..30033540 | 1263..1524 | 1310 | 100 | Plus |
| 3R | 32079331 | 3R | 30031110..30031344 | 111..345 | 1145 | 99.1 | Plus |
| 3R | 32079331 | 3R | 30033599..30033743 | 1524..1668 | 725 | 100 | Plus |
| 3R | 32079331 | 3R | 30033082..30033216 | 1130..1264 | 675 | 100 | Plus |
| 3R | 32079331 | 3R | 30034185..30034314 | 1987..2116 | 650 | 100 | Plus |
| 3R | 32079331 | 3R | 30032930..30033029 | 1035..1134 | 500 | 100 | Plus |
| 3R | 32079331 | 3R | 30030950..30031046 | 16..112 | 485 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 13:48:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2242..2397 | 1686..1847 | 183 | 61.6 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 964..1027 | 1787..1851 | 115 | 66.2 | Plus |
| gypsy6 | 7826 | gypsy6 GYPSY6 7826bp | 1196..1258 | 258..197 | 114 | 66.7 | Minus |
BS32383.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 11:49:31 Download gff for
BS32383.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Axn-RD | 1457..3554 | 17..2114 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:35:21 Download gff for
BS32383.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Axn-RD | 1457..3554 | 17..2114 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:35:21 Download gff for
BS32383.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30033805..30034125 | 1669..1989 | 100 | -> | Plus |
| 3R | 30034188..30034312 | 1990..2114 | 100 | | Plus |
| 3R | 30030951..30031046 | 17..112 | 100 | -> | Plus |
| 3R | 30031112..30031344 | 113..345 | 99 | -> | Plus |
| 3R | 30031423..30032112 | 346..1035 | 99 | -> | Plus |
| 3R | 30032931..30033027 | 1036..1132 | 100 | -> | Plus |
| 3R | 30033085..30033216 | 1133..1264 | 100 | -> | Plus |
| 3R | 30033281..30033539 | 1265..1523 | 100 | -> | Plus |
| 3R | 30033599..30033743 | 1524..1668 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 11:49:31 Download gff for
BS32383.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25856673..25856768 | 17..112 | 100 | -> | Plus |
| arm_3R | 25856834..25857066 | 113..345 | 99 | -> | Plus |
| arm_3R | 25857145..25857834 | 346..1035 | 99 | -> | Plus |
| arm_3R | 25858653..25858749 | 1036..1132 | 100 | -> | Plus |
| arm_3R | 25858807..25858938 | 1133..1264 | 100 | -> | Plus |
| arm_3R | 25859003..25859261 | 1265..1523 | 100 | -> | Plus |
| arm_3R | 25859321..25859465 | 1524..1668 | 100 | -> | Plus |
| arm_3R | 25859527..25859847 | 1669..1989 | 100 | -> | Plus |
| arm_3R | 25859910..25860034 | 1990..2114 | 100 | | Plus |
BS32383.pep Sequence
Translation from 16 to 2115
> BS32383.pep
MSGHPSGIRKHDDNECSGPRPPVPGEESRVKKMTEGVADTSKNSSPSYLN
WARTLNHLLEDRDGVELFKKYVEEEAPAYNDHLNFYFACEGLKQQTDPEK
IKQIIGAIYRFLRKSQLSISDDLRAQIKAIKTNPEIPLSPHIFDPMQRHV
EVTIRDNIYPTFLCSEMYILYIQQMSAQQERCTSSGATGSGSAGSSGSGG
SSLAGACALPPTTASGKQQLPQLVPPGAFINLPVSSVSGPPAGTCSASGS
VYGPSTSASSSGSISATDTLPRSSTLPTLHEDSVLSLCDDFEKVQMQEGG
GSLGSGSVGAGARAPDYPIRLTRDLLIATQKRRLEIRPPGDGRPYIQRRH
SSTESKAIRQSAMANKETNTFQVIPRTQRLHSNEHRPLKEEELVSLLIPK
LEEVKRKRDLEERARERNPGAALLTNERSSASDRAFAEAIREKFALDEDN
DQDILDQHVSRVWKDQTPHRSPGTMSPCPPIPSRRRTATHDSGMVSDGAM
SLSGHSMKHSKSMPDHSSCSRKLTNKWPSMNTDSGISMFSADTVTKYKDA
SSRSGSSTASKLEEAKRRLEDEPRRSRRYAQPPMQHLSQQPLASFSSSSS
GGSISLPHQPPPLPAKPPETIVVFSFCEEPVPYRIKIPGTQPTLRQFKDY
LPRRGHFRFFFKTHCEDPDSPVIQEEIVNDSDILPLFGDKAMGLVKPSD*
BS32383.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:41:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Axn-PD | 699 | CG7926-PD | 1..699 | 1..699 | 3644 | 100 | Plus |
| Axn-PF | 693 | CG7926-PF | 1..693 | 1..699 | 3600 | 99.1 | Plus |
| Axn-PB | 745 | CG7926-PB | 1..745 | 1..699 | 3587 | 93.8 | Plus |
| Axn-PA | 745 | CG7926-PA | 1..745 | 1..699 | 3587 | 93.8 | Plus |
| Axn-PG | 739 | CG7926-PG | 1..739 | 1..699 | 3543 | 93 | Plus |
