BS32388.complete Sequence
2384 bp assembled on 2013-09-16
> BS32388.complete
GAAGTTATCAGTCGACATGTATCCCTCGACCTTGCCGGCGGAGGCAGATC
CGAGCACCATGAACGGAAGCGTTGCAGAGCCTCCGGACTTCCAGGCTGCC
ACGGCGGCCGCGGCGGCAGCTGCCCGGGCCAGTAGCTTGGAACAGGACGA
GTGGAGCGTGGGCGAGTGCGGATTTCTGGATCCGGATGTGCAGCGCACCA
TGCGGAGCGGCAGTGCTGCGGAGGACATCACCCAGTACCCGATGCACGGC
TGGGTGGACGTAACCAAGGAGTTCCACGATGCCTGCGCGGAGCTGCAGCC
CGGGGAACTGGCCCAGGATATGCTGTTCGGTCTTTTTGAGGCCATGTCAG
CCATCGAGATCATGGACCCCAAGATGGACGTGGGCATGGGCTTCGACAAG
CAGGATCTTCCGCCGCCCTCTTTCGAGGCAGCCATTGCCACGGGCGCCAT
CAAACTGGACGATCTCACGCCCTCCGAACTGATTGGCATCTATGATGCTC
TGTTTTCCTGCCTGGTGTCCTGGCTGGAGGGCAACTCCATGGACCAGGTT
CTATTCACCTGCCTCTACCTGCACGCTCCCGCACAGATCAAGGATAAGGC
GCTGCGCGTCTTCTGCACTGCCGTGCGCAATCTCATCGTGGTCATCAAGA
AAATTATTGCCGTGGCAGCTGTCAACGAGGAGGAGGACTTCCAGCTGTAC
GGAAATTCTGCTCTTCTGGCTGCAGAGAAGGCACAGCCAGCCACTGTTTA
TAGCTCGCTAAAGGATGTGGAGGATGAGCTCATACGCAAGTGCAAAAAGC
TGACTTCCACGGAGGACTGGATGGCCGTGGTTCACCGGCTGCGTTTCATG
CGCCATCTTTTCCAGGTGATCTACCACGTGGAGCAAATGGCCAGCAATGA
TACCGTCGATGACAAGGTAGACATATACAAAATCCTGCTTGTGGCCTCCG
AGATGCTTCCAGGAATAAGGAACACTTTGGATCGGGGCACACAACCAGAG
AAGGGGTCTGACGCTCCCAATCCCATGGGTTTCTCTCCGCGCATCCACGA
CCGCAGCCAACCGCCCGCGTTTCCGCGTAGCATTAAGATCAGGGATCGTC
CATCCAGTTATCAGTTTCTAGAGGAAATGATTTCGCGCTTCAAATACGCC
TGCAAAGTCACCAAGTACAAGGATTACTATTCGGCGCTGAACTTCTTTAT
CGAGTACAGCAAAAAGTCGGGCCAGTGCATCCTGTCCAGAAGCGTGCTGC
AAACCCTGTTCAGCGCCAACATGCGTATGGCGCACGGAAAGCTTCCCATG
AAGCAGTTCCTGCGCCACTCGGTTCAGGTCTTCAACTCGCCACCCGTATT
GAATGCCAAGCATCCGGTGGCTGCCGATCCCAAGGTGCAGCAGCACCTGG
AGAACTTCTTCCGTTACTGCATTAACATGAACACCTTCACGCAGTTCATT
CGCATCTGCGGCTTCAATCGCGCCAGACAGCGGGATAAGCTGGCGCGTCT
GATAGAGAACTTCGACACCATCCAAGTGGATGCAGCGCGATTGGACTCTA
TGATGAACCAACTGGCCAACGAACGAGCCATGGAGGGCAACGAGCCCATG
GCCACCGCTCTGAAGCACAGCACCCACTTCTCCACATGGGTGCTGTACAA
CTGTTTCCGTGCGATGCTGATCTTCCTGATGTCCGGCTTTGAGCTGGAAC
TATATGCTGTGCATGAGTTCCTCTACATCTACTGGTATCCATACGAGTTC
CTCATTGGCTTCCTGGTCTCCGCGCTGACGCGCACGGAGAACATCCTCCT
GGCCCAGGAGGAGTACGCCGAGCACCAAAGTAAGACCCAGTCGGGCGGCA
GCGGAGCGGCTAAAAACCGCAAGGCGGCCAAGCCGAAAAAGAACAAAAAG
ACTCAAAGGCCGTACCGCGCCGAGATCGTCTTCTACCACGCGCTACTCAG
CCTCTGCGGCGGAATGTATAAAGCAATGGGCGCCCTGACCAAAGACGGAC
GCGTGCGACTGCCGCTGTCCAAGTTCGACAACGAGGAGATCCGCTACAAC
CGACGCTTCCTGCCCTTCGCCACACTCACCAGTCCTCCGCCAGTTTCGTA
CGCAGAGTTCAAAAACGTCCGGGAGCACATGATGCGACATAGCGTCGAGG
ATCTATATACCTATGCGGCCAAGCACTTTGACCAGGCCCGCAATGTTCTC
GAAAGCATTCAAAACCCAGATCAGGAGATGCTGGACCTCCTGCAAATCGC
ACGGACTAACTTTGTGGTGATGAATGTGCTGGCCCGCGGTCACCAGAAGG
AAGTCAAGCGGCAGCCAGAGTTCGACTTCTCCAAACACAGCTACTTCCCC
ATCATCAAGCTGAAGTAAAAGCTTTCTAGACCAT
BS32388.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:48:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4065-RB | 2352 | CG4065-PB | 1..2352 | 17..2368 | 11745 | 100 | Plus |
| CG4065-RA | 2355 | CG4065-PA | 1..2355 | 17..2368 | 11680 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:48:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4065-RB | 2536 | CG4065-RB | 138..2490 | 17..2369 | 11750 | 100 | Plus |
| CG4065-RA | 2539 | CG4065-RA | 138..2493 | 17..2369 | 11685 | 99.8 | Plus |
| Zfrp8-RA | 1306 | CG3260-RA | 1127..1270 | 2369..2226 | 705 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:48:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24135430..24136468 | 2227..1189 | 5195 | 100 | Minus |
| 2R | 25286936 | 2R | 24136768..24137335 | 1007..440 | 2840 | 100 | Minus |
| 2R | 25286936 | 2R | 24137399..24137770 | 439..68 | 1860 | 100 | Minus |
| 2R | 25286936 | 2R | 24136526..24136707 | 1189..1008 | 910 | 100 | Minus |
| 2R | 25286936 | 2R | 24135226..24135369 | 2369..2226 | 705 | 99.3 | Minus |
| 2R | 25286936 | 2R | 24137861..24137913 | 69..17 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:48:12 has no hits.
BS32388.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 11:49:33 Download gff for
BS32388.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4065-RB | 138..2487 | 17..2366 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:35:23 Download gff for
BS32388.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4065-RB | 138..2487 | 17..2366 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:35:23 Download gff for
BS32388.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24135229..24135367 | 2228..2366 | 99 | <- | Minus |
| 2R | 24135430..24136467 | 1190..2227 | 100 | <- | Minus |
| 2R | 24136526..24136707 | 1008..1189 | 100 | <- | Minus |
| 2R | 24136768..24137335 | 440..1007 | 100 | <- | Minus |
| 2R | 24137399..24137768 | 70..439 | 100 | <- | Minus |
| 2R | 24137861..24137913 | 17..69 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 11:49:33 Download gff for
BS32388.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20022752..20022890 | 2228..2366 | 99 | <- | Minus |
| arm_2R | 20022953..20023990 | 1190..2227 | 100 | <- | Minus |
| arm_2R | 20024049..20024230 | 1008..1189 | 100 | <- | Minus |
| arm_2R | 20024291..20024858 | 440..1007 | 100 | <- | Minus |
| arm_2R | 20024922..20025291 | 70..439 | 100 | <- | Minus |
| arm_2R | 20025384..20025436 | 17..69 | 100 | | Minus |
BS32388.pep Sequence
Translation from 16 to 2367
> BS32388.pep
MYPSTLPAEADPSTMNGSVAEPPDFQAATAAAAAAARASSLEQDEWSVGE
CGFLDPDVQRTMRSGSAAEDITQYPMHGWVDVTKEFHDACAELQPGELAQ
DMLFGLFEAMSAIEIMDPKMDVGMGFDKQDLPPPSFEAAIATGAIKLDDL
TPSELIGIYDALFSCLVSWLEGNSMDQVLFTCLYLHAPAQIKDKALRVFC
TAVRNLIVVIKKIIAVAAVNEEEDFQLYGNSALLAAEKAQPATVYSSLKD
VEDELIRKCKKLTSTEDWMAVVHRLRFMRHLFQVIYHVEQMASNDTVDDK
VDIYKILLVASEMLPGIRNTLDRGTQPEKGSDAPNPMGFSPRIHDRSQPP
AFPRSIKIRDRPSSYQFLEEMISRFKYACKVTKYKDYYSALNFFIEYSKK
SGQCILSRSVLQTLFSANMRMAHGKLPMKQFLRHSVQVFNSPPVLNAKHP
VAADPKVQQHLENFFRYCINMNTFTQFIRICGFNRARQRDKLARLIENFD
TIQVDAARLDSMMNQLANERAMEGNEPMATALKHSTHFSTWVLYNCFRAM
LIFLMSGFELELYAVHEFLYIYWYPYEFLIGFLVSALTRTENILLAQEEY
AEHQSKTQSGGSGAAKNRKAAKPKKNKKTQRPYRAEIVFYHALLSLCGGM
YKAMGALTKDGRVRLPLSKFDNEEIRYNRRFLPFATLTSPPPVSYAEFKN
VREHMMRHSVEDLYTYAAKHFDQARNVLESIQNPDQEMLDLLQIARTNFV
VMNVLARGHQKEVKRQPEFDFSKHSYFPIIKLK*
BS32388.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:41:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4065-PB | 783 | CG4065-PB | 1..783 | 1..783 | 4073 | 100 | Plus |
| CG4065-PA | 784 | CG4065-PA | 1..784 | 1..783 | 4061 | 99.9 | Plus |
