BS32390.complete Sequence
1412 bp assembled on 2013-05-24
> BS32390.complete
GAAGTTATCAGTCGACATGAAGGCGACCAGTTGCAGACCAATTCCATTCA
TCAACTTTCGGATTGTAAGATATTTCTATCGGCCACGACGATTGAACAAG
TATTACGATATTTACAGAATAGCTGCCCTTGTGCGGGATCGCGCCTGTCT
CTTCACGTGCCAGCAGGCCTCGCAGAACCTGCAGCAGCAGCAGCCCCGCT
TTTATAGTGCGCCAGGTCGCAGGGCCGGCTTCTTCTCGCAGTTCTTCGAC
AACATGAAGGCGGAAATGGATAAGAACAAGGAGATCAAGGACAATATCCG
AAAGTTCCGTGAAGAGGCCCAGAAGCTGGAAGAATCGGATGCCCTGAAAT
CGGCGCGGCAAAAGTTTAACATTGTCGAATCGGAGGCGCAAAAGTCGTCT
AGCATGCTGAAGGAGCAGCTGGGCGCCATCAAGGAGCGCGTAGGTGATGT
TCTGGAGGACGCCAGCAAATCCCACCTGGCCAAAAAGGTTACCGAGGAGC
TCTCGAAGAAGGCTAGGGGGGTCAGCGACACGATCTCCGACACCAGTGGC
AAGCTGGGCCAGACCAGCGCATTCCAGGCCATCTCTAACACGACGACGAC
CATCAAGAAGGAGATGGACAGCGCGAGCATAGAGAATCGTGTCTATCGTG
CTCCTGCCAAGTTGCGAAAGCGCGTCCAGCTCGTCATGAGCGATAGTGAT
CGCGTTGTGGAGCCCAACACGGAAGCCACTGGTATGGAGCTGCACAAGGA
CTCCAAGTTCTACGAGTCGTGGGAGAACTTCAAGAACAACAATACCTACG
TGAACAAGGTGCTTGACTGGAAGGTTAAATACGACGAGTCCGAGAACCCT
GTTATTCGTGCCTCCCGCCTGCTGACCGATAAAGTGTCCGACGTCATGGG
CGGACTCTTTTCAAAGACGGAGCTTTCGGAAACGATGACGGAGCTGGTGA
AAATCGATCCGAGCTTTGATCAGAAGGATTTCCTCCGCGATTGCGAAACG
GACATCATTCCAAATATTCTGGAATCGATTGTCCGTGGGGATCTGGAGAT
TCTGAAGGATTGGTGCTTTGAGAGCACTTTCAATATTATCGCAAATCCCA
TTAAGGAGGCTAAGAAGGCCGGCGTGTACCTGGACTCCAAGATCCTCGAC
ATCGAGAACATTGAACTAGCAATGGGCAAGGTTATGGAGCAGGGTCCGGT
ACTGATTATCACGTTCCAAGCCCAGCAGATTATGTGCGTGCGGGACCAGA
AGAGTCAGGTCGTCGAGGGCGATCCGGAGAAGGTGATGCGGGTGCACTAC
GTCTGGGTGCTGTGCCGCGACCGCAACGAACTCAACCCCAAGGCTGCCTG
GCGGCTGATGGAGCTGTCCGCCAACAGCTCAGAGCAATTTGTTTAGAAGC
TTTCTAGACCAT
BS32390.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:44:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11779-RA | 1380 | CG11779-PA | 1..1380 | 17..1396 | 6735 | 99.2 | Plus |
| CG11779-RE | 1287 | CG11779-PE | 4..1287 | 113..1396 | 6255 | 99.1 | Plus |
| CG11779-RB | 1287 | CG11779-PB | 4..1287 | 113..1396 | 6255 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:44:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11779-RA | 2281 | CG11779-RA | 170..1553 | 13..1396 | 6740 | 99.1 | Plus |
| CG11779-RE | 2474 | CG11779-RE | 155..1438 | 113..1396 | 6255 | 99.1 | Plus |
| CG11779-RB | 2679 | CG11779-RB | 360..1643 | 113..1396 | 6255 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:44:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19155133..19155798 | 1396..731 | 3240 | 99.1 | Minus |
| 3R | 32079331 | 3R | 19155863..19156406 | 733..190 | 2645 | 99.1 | Minus |
| 3R | 32079331 | 3R | 19159610..19159709 | 112..13 | 485 | 99 | Minus |
| 3R | 32079331 | 3R | 19156466..19156546 | 193..113 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:44:42 has no hits.
BS32390.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-05-24 12:17:22 Download gff for
BS32390.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11779-RA | 174..1553 | 17..1396 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:13:47 Download gff for
BS32390.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11779-RA | 174..1553 | 17..1396 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:34:10 Download gff for
BS32390.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11779-RA | 174..1553 | 17..1396 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:34:10 Download gff for
BS32390.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19155133..19155797 | 732..1396 | 99 | <- | Minus |
| 3R | 19155865..19156402 | 194..731 | 99 | <- | Minus |
| 3R | 19156466..19156546 | 113..193 | 100 | <- | Minus |
| 3R | 19159610..19159705 | 17..112 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:13:47 Download gff for
BS32390.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14980855..14981519 | 732..1396 | 99 | <- | Minus |
| arm_3R | 14981587..14982124 | 194..731 | 99 | <- | Minus |
| arm_3R | 14982188..14982268 | 113..193 | 100 | <- | Minus |
| arm_3R | 14985332..14985427 | 17..112 | 100 | | Minus |
BS32390.pep Sequence
Translation from 16 to 1395
> BS32390.pep
MKATSCRPIPFINFRIVRYFYRPRRLNKYYDIYRIAALVRDRACLFTCQQ
ASQNLQQQQPRFYSAPGRRAGFFSQFFDNMKAEMDKNKEIKDNIRKFREE
AQKLEESDALKSARQKFNIVESEAQKSSSMLKEQLGAIKERVGDVLEDAS
KSHLAKKVTEELSKKARGVSDTISDTSGKLGQTSAFQAISNTTTTIKKEM
DSASIENRVYRAPAKLRKRVQLVMSDSDRVVEPNTEATGMELHKDSKFYE
SWENFKNNNTYVNKVLDWKVKYDESENPVIRASRLLTDKVSDVMGGLFSK
TELSETMTELVKIDPSFDQKDFLRDCETDIIPNILESIVRGDLEILKDWC
FESTFNIIANPIKEAKKAGVYLDSKILDIENIELAMGKVMEQGPVLIITF
QAQQIMCVRDQKSQVVEGDPEKVMRVHYVWVLCRDRNELNPKAAWRLMEL
SANSSEQFV*
BS32390.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:20:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11779-PA | 459 | CG11779-PA | 1..459 | 1..459 | 2342 | 100 | Plus |
| CG11779-PE | 428 | CG11779-PE | 1..428 | 32..459 | 2167 | 99.8 | Plus |
| CG11779-PB | 428 | CG11779-PB | 1..428 | 32..459 | 2167 | 99.8 | Plus |
