BS32393.complete Sequence
1490 bp assembled on 2013-05-24
> BS32393.complete
GAAGTTATCAGTCGACATGAACAGAAAACACAATAAGATATCTCATAGCG
GGTCCCACATGCACGGTATCAAGGTGGAACCCAAAAAGTACTCGCCCCAG
GAGTACAGGGAGAAAATTCTTAGCCTGTTTCCGCTTCCGCCGAGACCGGC
AAATATGTGCCACGATGCGTTCGTGAAGAAACTTCTGGAGCCCTATGTCC
TAGAGACCAAAGAGGTGGTCCGAGCCGTAAAGATGACCCGTGATTCCACC
GGGGAAGACTCTAGTGAGGATACATACGAGGCGTTCCGGGCAAAGATGTA
CAAAACGAACTACACGGCACGGGCCACCGTATACATGGCACGGGCCACCA
TTTTAGCCAGGACCAGTGTCAAGTCAATCCTTAGTCCCGAGCAACGAGAT
TCGGCAGCCCAAACGACCCAAATGTTCAAGGTGCGCTTTGCAAACCTAAT
ATCCGACTTTCGGAACGTGTGCATCATCTACCAGCTGCTGCAGCTGCAAG
AAATCCTCAATGTGATGCGGGAGTATCCGCCAGCTGGCACCAATCCCAAC
GACACCATCTTCGGTTGGTCCTACAAGGAGAATCTAAAGCGTTTTGAACA
GCAACCGAGCACCGTCTATGTGGACATTCTGGAGAAGAACAAGCCGGAGG
CGACGCTTGACGACCTTAAGTTTTATGTGGATTTGGGAGAGCTAATCGGT
CTCGTGCAGGCCCTCCTAGACGATGTGATCCACGACAGGGATCTCTGTGC
GCCCAACGGCTTCATGGAGCTTCTTAAGGACACACAAGTTGATATCGACA
AGCTGATAGCTCTGCCTTACGAGACCATAATGGCCGAACACGATTCCTTA
CTTGAGGAGAAGGAGAAAAAGAATCGGGTGGGAAAGTTTCACAATCCGAA
ACTAACGGCCAAGCAGCACGCACTCAACAAGGAACGATTCCAGATCGACT
ACATGAGCCCGATCGAATCGCGCTATAAAGTGAATTGGACCCACGATGTT
GTGGACCAGGGTCAATACATTGATTTCCTACGCTGCAAGGTCCTTTCCGA
CGAGCTAGAAAAGATTGAAGAGCTCATGAGAACGGACTCGAGTGTGTGGA
GGAGCTGCCATTTGGAGTACGTCACACTGATCGAACAGTACAAGCAGCGC
ATCAATAAGATTCAACAAGATTACGACGACGATATGGAGACGGCCGAGAA
TAAGTTGCAGGCGACTCTTAACAGGGTGGGCAAGTGCAAGGAAGACCTGA
GGTCCTGCCAGGAAAAAGTTGAGGAGTTCCATGTGAAAATAGAAGAGGTG
CGAGAAAAGATTGCGAAGGAAGTGGAAAAGGAGCGTGCCCGTTTGTCAGC
TGCACGAGTTTCTAAACGAATGTCCCGGATATTGGCAAGACAGAAGGAGG
AGAAGAAGGCTGCCGCACAGCAGGCAAAACTGGACAAAAAGCTGGCCAGA
CAAAACAAAAAATCTCAAGAATAGAAGCTTTCTAGACCAT
BS32393.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:44:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33322-RA | 1458 | CG33322-PA | 1..1458 | 17..1474 | 7230 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:44:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33322-RA | 1599 | CG33322-RA | 65..1522 | 17..1474 | 7230 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:44:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20815415..20816176 | 778..17 | 3795 | 99.9 | Minus |
| 2L | 23513712 | 2L | 20814606..20814920 | 1352..1038 | 1545 | 99.4 | Minus |
| 2L | 23513712 | 2L | 20815138..20815310 | 950..778 | 850 | 99.4 | Minus |
| 2L | 23513712 | 2L | 20814414..20814536 | 1474..1352 | 615 | 100 | Minus |
| 2L | 23513712 | 2L | 20814984..20815074 | 1041..951 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:44:46 has no hits.
BS32393.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-05-24 12:17:24 Download gff for
BS32393.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33322-RA | 65..1522 | 17..1474 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:13:50 Download gff for
BS32393.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33322-RA | 65..1522 | 17..1474 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:34:12 Download gff for
BS32393.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33322-RA | 65..1522 | 17..1474 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:34:12 Download gff for
BS32393.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20814414..20814536 | 1352..1474 | 100 | <- | Minus |
| 2L | 20814607..20814918 | 1040..1351 | 99 | <- | Minus |
| 2L | 20814986..20815074 | 951..1039 | 100 | <- | Minus |
| 2L | 20815138..20815310 | 778..950 | 99 | <- | Minus |
| 2L | 20815416..20816176 | 17..777 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:13:50 Download gff for
BS32393.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20814414..20814536 | 1352..1474 | 100 | <- | Minus |
| arm_2L | 20814607..20814918 | 1040..1351 | 99 | <- | Minus |
| arm_2L | 20814986..20815074 | 951..1039 | 100 | <- | Minus |
| arm_2L | 20815138..20815310 | 778..950 | 99 | <- | Minus |
| arm_2L | 20815416..20816176 | 17..777 | 99 | | Minus |
BS32393.pep Sequence
Translation from 16 to 1473
> BS32393.pep
MNRKHNKISHSGSHMHGIKVEPKKYSPQEYREKILSLFPLPPRPANMCHD
AFVKKLLEPYVLETKEVVRAVKMTRDSTGEDSSEDTYEAFRAKMYKTNYT
ARATVYMARATILARTSVKSILSPEQRDSAAQTTQMFKVRFANLISDFRN
VCIIYQLLQLQEILNVMREYPPAGTNPNDTIFGWSYKENLKRFEQQPSTV
YVDILEKNKPEATLDDLKFYVDLGELIGLVQALLDDVIHDRDLCAPNGFM
ELLKDTQVDIDKLIALPYETIMAEHDSLLEEKEKKNRVGKFHNPKLTAKQ
HALNKERFQIDYMSPIESRYKVNWTHDVVDQGQYIDFLRCKVLSDELEKI
EELMRTDSSVWRSCHLEYVTLIEQYKQRINKIQQDYDDDMETAENKLQAT
LNRVGKCKEDLRSCQEKVEEFHVKIEEVREKIAKEVEKERARLSAARVSK
RMSRILARQKEEKKAAAQQAKLDKKLARQNKKSQE*
BS32393.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:20:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33322-PA | 485 | CG33322-PA | 1..485 | 1..485 | 2495 | 100 | Plus |
| Mst36Fb-PB | 470 | CG42626-PB | 29..465 | 38..484 | 261 | 24.9 | Plus |
| Mst36Fa-PC | 498 | CG31801-PC | 3..458 | 5..485 | 224 | 23.6 | Plus |
