BS32395.complete Sequence
3260 bp assembled on 2013-10-14
> BS32395.complete
GAAGTTATCAGTCGACATGTACAAAAATGCACTGAAAGGCGGTATTCGCA
CGGCCAAGCAGGCTTGGAAGTTAAAAAACGAACTGGGCAAACTCAACTTG
GACTTGGCCAAGGCAAACTCAGATTTTGAGCAGCATTTGTGCGAAGCTGC
CAGATATACTCAGAGTTTCCACTTCCTCGCCAGAAACACCCCGAGAACAC
CTTTGTTGCTACTAAAAACGACAGGCGATAACAACAGCTCCCCCCGAATC
GTTGCTAACTATTATCGGACAGCTCCAGTTAACCCCCCGAAGCAGCAGAA
TCCGAAACCCAGCGGAGCGGCAGATAAGACCACCTCAGTAAAGCATCTTT
TTCGAGCAGAAAGTGGCCACCTCAACGCGCTAATCTCGTCGAAGCAATTT
GTGAAGGTGCAAAAGCAGTTCTACAGGGACTTCTCTTCCGTTTCGCTTGG
AGCCCCTCTGAAGAGCAGTGACGCTCCGTTGCTGGGAGATTTGTGCAGTC
AGTATCGCGCCATCCTCGCCCACACATCAGCGGACGTGATTCCAGGCCAG
GATCGCCATCATCCGGGTTGCAACTATCAGCAGATCAGGCGGGCACACAC
ACAGTTACTGAGCAAGGAGCAGCAGCTGGAGCAGGAGCGCAAGATGGCCC
AGAAGGCAAAGTTCGAGAGGCTGCCCACCAATGTGGTGCCAAGGCACTAC
GAGCTCCTCCTGCAGCCCAATCTCAAGGAGTTCACCTTCACGGGCAAGAC
CGTGGTGCAAGTCAATGTCAAGGAGCCCACTACCCAGATAACCCTGAATG
CCCTGGACATTGTTCTCGATTCGGTAGAGCTCCATTTTGAGTGCAGCAAA
CTGAAGCCGGAGAAGATAGTGTACTCTGCGGAAAATGAGACGGCCACGCT
GGAGTTTGCCCAAGAGATTCCGGCGGAGACTCAAGGCGTACTGCATATGT
CCTTTACGGGCGAGTTGAACGACAAGATGAAGGGCTTCTACAGGAGCAAG
TACTTCGGACCGAACGGCGAAGAGCGCTTTGCGGGCGTCACCCAGTTTGA
GGCCACCGATGCCCGACGCTGCTTCCCCTGCTGGGATGAGCCCGCCATCA
AAGCCACCTTCGACATCACACTGGTGGTGCCCAAGGACCGGGTGGCTCTG
TCCAACATGCCGGTCATCAAGGAGGATTCCCTTCCAGACGGTCTGCGACG
AGTGCGTTTCGACCGCACGCCCATCATGTCCACCTACCTGGTGGCCGTCG
TAGTGGGCGAGTACGACTATGTCGAGGGCAAGTCCGACGATGGCGTCCTC
GTCAGGGTTTTCACACCCGTTGGCAAACGCGAGCAGGGCACCTTCGCCCT
GGAGGTGGCCACTAAGGTGCTGCCGTACTACAAGGACTACTTCAACATCG
CCTATCCGTTGCCCAAGATGGACCTCATCGCCATCTCCGACTTCTCGGCC
GGCGCCATGGAGAACTGGGGCCTGGTCACCTACCGTGAGACCTTCGTGCT
AGTGGACCCGAAGAACACCTCGCTGATGCGCAAGCAGTCGATTGCGCTGA
CAGTGGGTCACGAGATTGCCCATCAGTGGTTCGGCAATCTGGTAACTATG
GAGTGGTGGACCCATCTTTGGTTGAACGAAGGCTATGCCTCTTTCGTGGA
GTTCCTGTGCGTACACCACCTGTTCCCGGAGTATGACATCTGGACGCAGT
TCGTCACAGACATGTACACGCGAGCCCTGGAGCTGGACTCTCTGAAAAAC
TCGCATCCCATCGAGGTGCCCGTGGGCCATCCGTCCGAAATCGACGAGAT
CTTCGATGAAATCAGCTACAATAAGGGTGCCTCGGTGATTCGCATGCTGC
ACGACTACATCGGCGAGGATACCTTCAGAAAGGGCATGAATCTGTATCTA
ACTCGTCATCAGTACGGAAACACCTGCACCGAGGACCTGTGGGCTGCTCT
GCAAGAAGCCAGCTCCAAGAACGTGAGCGACGTGATGACCTCGTGGACAC
AGCACAAGGGCTTCCCAGTGGTTAGCGTCGAGTCAGAACAGACCAGCAAG
AATCAACGCCTGCTGCGCCTTAAGCAGTGCAAGTTTACGGCTGATGGCTC
ACAGGCGGACGAGAACTGCCTATGGGTGGTGCCCATTTCGGTGTCTACCT
CAAAGAATCCCACAGGGATCGCCAAGACCTTCCTGCTGGACAAGTCCTCA
ATGGAGGTGACCCTCGACAACGTCGATGAGGACGATTGGATCAAGATCAA
TCCGGGAACAGTGGGTTACTATCGCACCCGCTATTCGCAAGAAATGCTAG
AACAGCTGATGCCCGCAGTAGAGAAGATGGAGCTGCCGCCTCTGGATCGC
CTGGGATTGATCGATGACATGTTTGCCATGGTGCAGGCGGGTCACGCAAG
TACTGCCGATGTTCTGGCTTTGGTTGATTCGTACAGAAACGAGACGAACT
ACACGGTGTGGACTGCCATCACCAACTCGCTCACCAATCTGCACATTCTT
ATCTCGCACACCGATCTTATGGAGGACTTCCATCGCTTCGGACGGAATCT
GTACGAGCCGGTGGCCTATCGCCTGGGCTGGGAGCCACGCGATGGGGAGA
ATCACCTGGACACATTGCTCAGGAGCCTGGTGCTCACACGACTGGTCTCC
TTCCGCAGCAGCGATACCATCGAAGAGGCAAAAATCCGCTTCCGCAGACA
CGTGAACGGCACAGAACTGCTACCGGCGGATCTGCGCACCACTTGCTACA
AGGCCGTACTGCAAGATGGCGACGAAAAGATCTTCAATGAGATGCTTGAT
CTGTACAGGGCCACCGATTTGCACGAGGAGCAGGACCGCATCTCGCGAGC
TCTCGGTTGTTGCGGAGATTTAAAGCTGTTGCGTCGTGTCATCGACTTTG
CCATGTCGAGTGAAGTGAGGGCTCAGGACTCTGTGTTTGTAATTGTCGCC
GTGGCCATCAACCCCAAGGGACGTGACATGGCTTGGGAGTTCTTTAAGGA
GAACAACAAACAGCTGCTGGAACGCTACCAGGGTGGCTTTCTGCTTTCCC
GTCTGATTAAGTATCTGATCGAGAACTTCGCGTCTGAGGAGCGCGCCAAA
GAAGTGGAAGAGTTCTTGCAGGTCAATCAAATCCCCGGCTGCGAGCGTAC
TGTATCCCAGGCGGTGGAGACCATCCGACTCAACGCGGCCTGGCTGCAGC
GTGACCGCGAGCAGTTGGCGATCTTCCTCAGGGATGACCAATAAAAGCTT
TCTAGACCAT
BS32395.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:07:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Psa-RC | 3228 | CG1009-PC | 1..3228 | 17..3244 | 15780 | 99.3 | Plus |
| Psa-RE | 3162 | CG1009-PE | 64..3162 | 146..3244 | 15135 | 99.2 | Plus |
| Psa-RI | 2601 | CG1009-PI | 1..2601 | 644..3244 | 12660 | 99.1 | Plus |
| Psa-RE | 3162 | CG1009-PE | 1..64 | 17..80 | 320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:07:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Psa-RC | 3781 | CG1009-RC | 92..3321 | 16..3245 | 15790 | 99.3 | Plus |
| Psa-RI | 3665 | CG1009-RI | 106..3205 | 146..3245 | 15140 | 99.2 | Plus |
| Psa-RE | 3715 | CG1009-RE | 156..3255 | 146..3245 | 15140 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:07:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1521133..1522458 | 1583..2908 | 6450 | 99.1 | Plus |
| 3L | 28110227 | 3L | 1519947..1520764 | 767..1584 | 3970 | 99 | Plus |
| 3L | 28110227 | 3L | 1518175..1518798 | 145..768 | 3105 | 99.8 | Plus |
| 3L | 28110227 | 3L | 1522704..1522920 | 3029..3245 | 1055 | 99.1 | Plus |
| 3L | 28110227 | 3L | 1522521..1522645 | 2908..3032 | 610 | 99.2 | Plus |
| 3L | 28110227 | 3L | 1517986..1518052 | 80..146 | 335 | 100 | Plus |
| 3L | 28110227 | 3L | 1517691..1517755 | 16..80 | 325 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:07:54 has no hits.
BS32395.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-14 12:23:07 Download gff for
BS32395.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Psa-RC | 93..3318 | 17..3242 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:41:51 Download gff for
BS32395.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Psa-RC | 93..3318 | 17..3242 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:41:51 Download gff for
BS32395.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1517692..1517755 | 17..80 | 100 | -> | Plus |
| 3L | 1517987..1518052 | 81..146 | 100 | -> | Plus |
| 3L | 1518177..1518796 | 147..766 | 99 | -> | Plus |
| 3L | 1519947..1520763 | 767..1583 | 99 | -> | Plus |
| 3L | 1521134..1522458 | 1584..2908 | 99 | -> | Plus |
| 3L | 1522522..1522644 | 2909..3031 | 99 | -> | Plus |
| 3L | 1522707..1522917 | 3032..3242 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-14 12:23:07 Download gff for
BS32395.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1518177..1518796 | 147..766 | 99 | -> | Plus |
| arm_3L | 1519947..1520763 | 767..1583 | 99 | -> | Plus |
| arm_3L | 1521134..1522458 | 1584..2908 | 99 | -> | Plus |
| arm_3L | 1522522..1522644 | 2909..3031 | 99 | -> | Plus |
| arm_3L | 1522707..1522917 | 3032..3242 | 99 | | Plus |
| arm_3L | 1517692..1517755 | 17..80 | 100 | -> | Plus |
| arm_3L | 1517987..1518052 | 81..146 | 100 | -> | Plus |
BS32395.pep Sequence
Translation from 16 to 3243
> BS32395.pep
MYKNALKGGIRTAKQAWKLKNELGKLNLDLAKANSDFEQHLCEAARYTQS
FHFLARNTPRTPLLLLKTTGDNNSSPRIVANYYRTAPVNPPKQQNPKPSG
AADKTTSVKHLFRAESGHLNALISSKQFVKVQKQFYRDFSSVSLGAPLKS
SDAPLLGDLCSQYRAILAHTSADVIPGQDRHHPGCNYQQIRRAHTQLLSK
EQQLEQERKMAQKAKFERLPTNVVPRHYELLLQPNLKEFTFTGKTVVQVN
VKEPTTQITLNALDIVLDSVELHFECSKLKPEKIVYSAENETATLEFAQE
IPAETQGVLHMSFTGELNDKMKGFYRSKYFGPNGEERFAGVTQFEATDAR
RCFPCWDEPAIKATFDITLVVPKDRVALSNMPVIKEDSLPDGLRRVRFDR
TPIMSTYLVAVVVGEYDYVEGKSDDGVLVRVFTPVGKREQGTFALEVATK
VLPYYKDYFNIAYPLPKMDLIAISDFSAGAMENWGLVTYRETFVLVDPKN
TSLMRKQSIALTVGHEIAHQWFGNLVTMEWWTHLWLNEGYASFVEFLCVH
HLFPEYDIWTQFVTDMYTRALELDSLKNSHPIEVPVGHPSEIDEIFDEIS
YNKGASVIRMLHDYIGEDTFRKGMNLYLTRHQYGNTCTEDLWAALQEASS
KNVSDVMTSWTQHKGFPVVSVESEQTSKNQRLLRLKQCKFTADGSQADEN
CLWVVPISVSTSKNPTGIAKTFLLDKSSMEVTLDNVDEDDWIKINPGTVG
YYRTRYSQEMLEQLMPAVEKMELPPLDRLGLIDDMFAMVQAGHASTADVL
ALVDSYRNETNYTVWTAITNSLTNLHILISHTDLMEDFHRFGRNLYEPVA
YRLGWEPRDGENHLDTLLRSLVLTRLVSFRSSDTIEEAKIRFRRHVNGTE
LLPADLRTTCYKAVLQDGDEKIFNEMLDLYRATDLHEEQDRISRALGCCG
DLKLLRRVIDFAMSSEVRAQDSVFVIVAVAINPKGRDMAWEFFKENNKQL
LERYQGGFLLSRLIKYLIENFASEERAKEVEEFLQVNQIPGCERTVSQAV
ETIRLNAAWLQRDREQLAIFLRDDQ*
BS32395.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:50:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Psa-PC | 1075 | CG1009-PC | 1..1075 | 1..1075 | 5616 | 100 | Plus |
| Psa-PE | 1053 | CG1009-PE | 1..1053 | 1..1075 | 5468 | 98 | Plus |
| Psa-PI | 866 | CG1009-PI | 1..866 | 210..1075 | 4527 | 100 | Plus |
| Psa-PH | 866 | CG1009-PH | 1..866 | 210..1075 | 4527 | 100 | Plus |
| Psa-PF | 866 | CG1009-PF | 1..866 | 210..1075 | 4527 | 100 | Plus |
