BS32411.complete Sequence
1568 bp assembled on 2013-05-22
GenBank Submission: KX802615
> BS32411.complete
GAAGTTATCAGTCGACATGTACTATTCAAAAGAATCCGTTCAAACTCACA
CAATATCCGGCGAACGTTGCCAATCCCATTTACTTGCAGCTGACAACAAC
AGCGGATCCGGAGGAGGTGGAAGCGGTGGCGGTGGCGCCGGTAACAATAA
CAGTGCCAATAGTGGTAAGAACTCGACGCACAGGTTCGCTGAGACCAGTG
TGATCACCAATCAATTGTTGGAAAAATGGCGGAAAAACTTCTACAGCGAA
CCGAAGAATCTGCTGGCGCAGAACGTCTGCTCACGCGTTGATCCGTTCGA
TGTGTGCCTGTCCAGGAAGGCACTGGAGACCACCAATCATGTGTTCAACT
ACAAGGTGGAAACGGAGGGCAAGCCGGTGACCAATCAAAGGAGCTCCGGC
CGCTGCTGGCTGTTTGCGGCCCTCAACTGCATCCGCCTGCCATTCATGAA
GAACTACAATCTGGACGAGTTCGAATTCTCGCAGGCCTTCCTCTTCTACT
GGGACAAGATCGAGCGTTGCAACTACTTTCTCAACAATGTTGTGAAGACG
GCACAGCGCGGCGAGAAGGTTGATGGTCGTCTGGTGTCGTTCCTGCTACT
CGATCCCACCTCCGATGGCGGCCAGTGGGACATGCTGGTCAATCTGATAA
CCAAACACGGCCTTATGCCAAAGAAATGCTTTCCCGAGAGCTTCAGCTGC
GAGTCCAGCTTACGAATGAACGCCATACTGAAGAGCAAGCTACGGGAGTA
TGCCCGCAATTTGCGCGTGTTGATGGAGAAGAATCCCACGGATGAGGAGA
TCGCCTGCAAGATCCAGGAGCAAATGGCCGAGATCTACAAGGTGGTTGGC
ATTTGCCTGGGCATACCCTCGGAGACCTTCACCTGGGAGTACTATGACAA
GAGCAAGAACTATCAGTCAATCGGACCCGTTAGTTCGCTGGAGTTCTATG
AGCGTTATGTTAAGCCGCATTTCAACGTGGAGGACAAAGTGTGCCTGGTC
ACCGATCCTCGGCCGACGAGTAGCTATGACCAGGCATACACTGTTGACTG
CCTGGGCAACGTGGTTGGCGGTCGACCCGTTCTGTATAACAATCAGTCCG
TCGAACTGCTCCTTGCGGTTGTCACCAAGTCGCTAAAGGCCGGCGAGGCC
GTTTGGTTTGGCTGCGAGGTTAGCAAGCGATTCGCCTCCAAGCAGGGCAT
CGAGGATGTGGATGTCCACGATTTTAAGCTGGTCTTCGACATTGACATAC
AAACGACATTCTCCAAGGCAGACCGCCTGATCTACGGTGAATCGGCCATG
ACCCATGCCATGGTTTTCACCGCCGTATCCGTGGATAAGAGCGGCGTGGC
CCAGAAATTGCGTGTGGAGAACTCGTGGGGTGAGGATCGCGGCGAGAAGG
GCTATCTGGTGATGAACGCCGATTGGTTTAGGGAGTTTGGATTCGAGGTG
GTCGTCGACAAGAAGTACGTGCCCGAGGATGTGTTGCGCGTGTTCGACAT
GGATCCGATCGTACTGCCTGCCTGGGATCCCATGGGTACGCTAGCACAGT
AGAAGCTTTCTAGACCAT
BS32411.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:39:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1440-RD | 1656 | CG1440-PD | 121..1656 | 17..1552 | 7665 | 99.9 | Plus |
| CG1440-RC | 1536 | CG1440-PC | 1..1536 | 17..1552 | 7665 | 99.9 | Plus |
| CG1440-RA | 1467 | CG1440-PA | 5..1467 | 90..1552 | 7300 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:39:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1440-RD | 2394 | CG1440-RD | 355..1890 | 17..1552 | 7665 | 99.9 | Plus |
| CG1440-RC | 2040 | CG1440-RC | 329..1864 | 17..1552 | 7665 | 99.9 | Plus |
| CG1440-RB | 1969 | CG1440-RB | 331..1793 | 90..1552 | 7300 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:39:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8439036..8439758 | 17..739 | 3615 | 100 | Plus |
| X | 23542271 | X | 8439817..8440294 | 738..1215 | 2375 | 99.8 | Plus |
| X | 23542271 | X | 8440545..8440760 | 1337..1552 | 1080 | 100 | Plus |
| X | 23542271 | X | 8440361..8440481 | 1216..1336 | 605 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 13:39:17 has no hits.
BS32411.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-05-22 09:59:48 Download gff for
BS32411.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1440-RC | 329..1864 | 17..1552 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:11:13 Download gff for
BS32411.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1440-RC | 329..1864 | 17..1552 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:32:04 Download gff for
BS32411.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1440-RC | 329..1864 | 17..1552 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:32:04 Download gff for
BS32411.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8439036..8439758 | 17..739 | 100 | -> | Plus |
| X | 8439819..8440294 | 740..1215 | 99 | -> | Plus |
| X | 8440361..8440481 | 1216..1336 | 100 | -> | Plus |
| X | 8440545..8440760 | 1337..1552 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:11:13 Download gff for
BS32411.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8333069..8333791 | 17..739 | 100 | -> | Plus |
| arm_X | 8333852..8334327 | 740..1215 | 99 | -> | Plus |
| arm_X | 8334394..8334514 | 1216..1336 | 100 | -> | Plus |
| arm_X | 8334578..8334793 | 1337..1552 | 100 | | Plus |
BS32411.pep Sequence
Translation from 16 to 1551
> BS32411.pep
MYYSKESVQTHTISGERCQSHLLAADNNSGSGGGGSGGGGAGNNNSANSG
KNSTHRFAETSVITNQLLEKWRKNFYSEPKNLLAQNVCSRVDPFDVCLSR
KALETTNHVFNYKVETEGKPVTNQRSSGRCWLFAALNCIRLPFMKNYNLD
EFEFSQAFLFYWDKIERCNYFLNNVVKTAQRGEKVDGRLVSFLLLDPTSD
GGQWDMLVNLITKHGLMPKKCFPESFSCESSLRMNAILKSKLREYARNLR
VLMEKNPTDEEIACKIQEQMAEIYKVVGICLGIPSETFTWEYYDKSKNYQ
SIGPVSSLEFYERYVKPHFNVEDKVCLVTDPRPTSSYDQAYTVDCLGNVV
GGRPVLYNNQSVELLLAVVTKSLKAGEAVWFGCEVSKRFASKQGIEDVDV
HDFKLVFDIDIQTTFSKADRLIYGESAMTHAMVFTAVSVDKSGVAQKLRV
ENSWGEDRGEKGYLVMNADWFREFGFEVVVDKKYVPEDVLRVFDMDPIVL
PAWDPMGTLAQ*
BS32411.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:17:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1440-PD | 551 | CG1440-PD | 41..551 | 1..511 | 2710 | 100 | Plus |
| CG1440-PC | 511 | CG1440-PC | 1..511 | 1..511 | 2710 | 100 | Plus |
| CG1440-PA | 488 | CG1440-PA | 2..488 | 25..511 | 2581 | 99.8 | Plus |
| CG1440-PB | 368 | CG1440-PB | 1..368 | 144..511 | 1944 | 100 | Plus |
| CG13423-PA | 476 | CG13423-PA | 4..474 | 62..509 | 725 | 35.4 | Plus |
