BS32465.complete Sequence
2192 bp assembled on 2013-10-14
GenBank Submission: KX804487
> BS32465.complete
GAAGTTATCAGTCGACATGAAAGTGAAAAAAACGCATTGGGCCATGTTCG
CGATCACGGTGGGCATTATAATAGGCTGCATGATATGCATCGCTGTGTTC
GCCGGTTTCCAGCACGAGGACGTCAAGTTCAAGACGATGCTGGTGAGCAT
TGTGATAGTGCTGATCTTCCAGTTCCTCATCGGTGACCCGATCAAGTTCG
TGATCCTGTCCATCGACCGGGCCCTGTGGCCACCGCGGATCTATATACCG
CCGCGATGTGACAAGGATGAGATGGATGAGAAGGAGGAACGCAGGGACTT
CCTCAAGCAGCGTCTGATTAACAAGCGCGCCAACCTGATGCTGACCTCGC
GCTACAGGAACTATAAGCTCAACGATCAGTACAAGATGATCGCCCACGAT
CTCTTCATCTACGGCCCGTACTTTCTCTGCCTGATGTGCCTGGTGCTGGT
GACGAGGGATCAAACCCTCTACCATAACACGCGCATCATCACGGATCTGT
TTATGTACAACCACACGGACTACACGGGCCTGCAGGAGGTGTACTTCCTC
AACCAGCTGTTCGACTTCATAGAGTCCACTCTGGTGCTCGCCTTCAACTC
AAATTCCACCGAAAGCGGTTCACCCGGCTGGGCACACGCCGAGCAATCGG
TGCTACTGGGCGTGATGCGACTGCGCCAGCTGCGCGTGTCCAATCCGCAA
GTCGGCCTCGGTCCACCGAAGTTCTCCGATACATACTACATGCCCGACTG
GCAGCTGCCGTACCGCAAACTCCACTACTCCGACAAGTACTGGCGCATCT
ACGAGCCGTGGATACCCATCAAGATGGGCTTTGAGTTCCTCGACGCCCTG
CTCATGAACTTCGACCATGTGGGCTCGCTCAATAGCTATCCAGAGTTGGC
GGGCTACGTCAGCCTGTTGGCCAGGAGCGCGGCTAATAGCATGAAGGTGA
TTGACTACCTCTCGGAGAACCACTGGCTAACGCTGAACACGTCGGCGGTG
TTCATCGACTTTACGTTGTACAACGTGGACGTGAATCTGTTTAGCATTTG
TACGCTGCGCGTGGAGAAGACACCATTCGGCGGCATAGTGCCCGACGTGC
AGGTGGACAGCGCCAAGCTGCTGGAGAACGTCGATCAGATGCCATACACG
GGACTGTTGGCACTGCTCATCTACGTGCTGGTCTTCATACAGTTCGCCCA
GACGCTGGCGGTCAAGTTGTGGTACGAGCCGCATCTGCTGAAGAGCGTTT
GGAACAAGCTGGATCTGTTCATCTTTATGGTCAACGTGCTGGTGGTGGTG
CTGGTGGTGCTGCGCGAGTCCCTGGTGGCCAGCATGATGAAGAAGGTGGA
GGGTGCCAGCAAGATGGAGTTCATCGACTTTCGGCGGCCGTCGCGCATGC
ACCAATTGACCACGATCACGATCGGCTTTCTGATTTGCATAACCACGCTG
CGACTGTGGCGAGTGCTGCAGTTCGCCAGCGTCTTCAAGCTGTTCACCAG
GACACTGTACTTGGCCTGGTCGGCGGTGGCCAGCACTGCGATCGCCATTG
TCATATTCCTTATCGGCTTCTGCTTCGCCGTGGTCACCATAAATGGCAAC
TACAGCAGCAACTTTAACAAGTTAGTCAAGAGCATGGTGATGTGCATGTG
CTACTCCTTCGGCTTTAGTGCCCAGGTGAAGCCATCGGAGCTCTTTCACG
GCGGCAAGTGGCTGGGCATTCTCTGCTACGGCGTCTTGGCCTTCGTCATC
ATTGTGCTGCTGATCAATGTCTTTGTGTCCCTGATCAACGACTACTTTAC
CGTGGCGAAGACGATCAGGGACTCGGAACGGGAGAATCGGATCACTTTCT
TCGAATTTCTGGTCGTCGAGTTCTCGGGCGTCTTAGGACGCTTCCGCAAG
CTGCCCTGCTGGCGGAGGAACTACGTCCGCAATGGGCGTACGGTGGCGGA
AAACGTGAGCCGGAAACTGGACTCCATGGACAGGCAGCGTTTGATGCGGC
GAAGGTTGCGGCAGGGCCGCCATCACCTCACCTTGATCCGAATGTTTCTC
TTCGACGAATATGTTGAATGGCCGCAGGAGCAGCAGAAACAGCCAGAAGC
GCAAGATCCAGATCCCAATTTGGGGCCAGACGGATCGCCGCCGCAGGATA
AGAGACAGGACGAGGCTGAAGCCTAAAAGCTTTCTAGACCAT
BS32465.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:07:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| brv3-RB | 2160 | CG13762-PB | 1..2160 | 17..2176 | 10680 | 99.6 | Plus |
| brv3-RC | 2253 | CG13762-PC | 1..2010 | 17..2026 | 9945 | 99.7 | Plus |
| brv3-RC | 2253 | CG13762-PC | 2104..2253 | 2027..2176 | 735 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:07:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| brv3-RB | 2334 | CG13762-RB | 47..2212 | 12..2177 | 10695 | 99.6 | Plus |
| brv3-RC | 2427 | CG13762-RC | 47..2061 | 12..2026 | 9955 | 99.6 | Plus |
| brv3-RC | 2427 | CG13762-RC | 2155..2305 | 2027..2177 | 740 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:07:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2622435..2623516 | 2026..945 | 5395 | 99.9 | Minus |
| X | 23542271 | X | 2623592..2624529 | 949..12 | 4585 | 99.3 | Minus |
| X | 23542271 | X | 2622191..2622341 | 2177..2027 | 740 | 99.3 | Minus |
Blast to na_te.dros performed 2014-11-28 14:07:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dana\Tom | 7060 | Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). | 1153..1206 | 1100..1153 | 135 | 72.2 | Plus |
BS32465.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-14 11:26:15 Download gff for
BS32465.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| brv3-RB | 52..2209 | 17..2174 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:41:37 Download gff for
BS32465.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| brv3-RB | 52..2209 | 17..2174 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:41:37 Download gff for
BS32465.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2622194..2622341 | 2027..2174 | 99 | <- | Minus |
| X | 2622435..2623514 | 947..2026 | 99 | <- | Minus |
| X | 2623595..2624524 | 17..946 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-14 11:26:15 Download gff for
BS32465.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2517628..2518557 | 17..946 | 99 | | Minus |
| arm_X | 2516227..2516374 | 2027..2174 | 99 | <- | Minus |
| arm_X | 2516468..2517547 | 947..2026 | 99 | <- | Minus |
BS32465.pep Sequence
Translation from 16 to 2175
> BS32465.pep
MKVKKTHWAMFAITVGIIIGCMICIAVFAGFQHEDVKFKTMLVSIVIVLI
FQFLIGDPIKFVILSIDRALWPPRIYIPPRCDKDEMDEKEERRDFLKQRL
INKRANLMLTSRYRNYKLNDQYKMIAHDLFIYGPYFLCLMCLVLVTRDQT
LYHNTRIITDLFMYNHTDYTGLQEVYFLNQLFDFIESTLVLAFNSNSTES
GSPGWAHAEQSVLLGVMRLRQLRVSNPQVGLGPPKFSDTYYMPDWQLPYR
KLHYSDKYWRIYEPWIPIKMGFEFLDALLMNFDHVGSLNSYPELAGYVSL
LARSAANSMKVIDYLSENHWLTLNTSAVFIDFTLYNVDVNLFSICTLRVE
KTPFGGIVPDVQVDSAKLLENVDQMPYTGLLALLIYVLVFIQFAQTLAVK
LWYEPHLLKSVWNKLDLFIFMVNVLVVVLVVLRESLVASMMKKVEGASKM
EFIDFRRPSRMHQLTTITIGFLICITTLRLWRVLQFASVFKLFTRTLYLA
WSAVASTAIAIVIFLIGFCFAVVTINGNYSSNFNKLVKSMVMCMCYSFGF
SAQVKPSELFHGGKWLGILCYGVLAFVIIVLLINVFVSLINDYFTVAKTI
RDSERENRITFFEFLVVEFSGVLGRFRKLPCWRRNYVRNGRTVAENVSRK
LDSMDRQRLMRRRLRQGRHHLTLIRMFLFDEYVEWPQEQQKQPEAQDPDP
NLGPDGSPPQDKRQDEAEA*
BS32465.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:49:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| brv3-PB | 719 | CG13762-PB | 1..719 | 1..719 | 3762 | 100 | Plus |
| brv3-PC | 750 | CG13762-PC | 1..750 | 1..719 | 3720 | 95.9 | Plus |
| brv2-PA | 736 | CG16793-PA | 14..659 | 11..661 | 1425 | 42.6 | Plus |
| brv2-PB | 714 | CG16793-PB | 14..637 | 11..661 | 1333 | 40.7 | Plus |
| brv1-PA | 728 | CG9472-PA | 3..652 | 4..658 | 1315 | 39.8 | Plus |
