BS32473.complete Sequence
1154 bp assembled on 2013-05-23
GenBank Submission: KX804892
> BS32473.complete
GAAGTTATCAGTCGACATGGCCAAACGCGATATCCTGCCCATCTTTCCAT
CCCGCGCCAATTCGGTGATCATGAAGCAGCGCGTTTTGGCGGCTAGAAGG
GGCGTGGGTCTCCTCAAGCGGAAGCGGGACGCCATCGATATGAAGCTACG
CGAATTGCGTCGCATCCGCTTCGACCAGGACATGCACGGCGATGAGGCGA
TGCGCAATGCCATATTCTCGATGGCAAAGGCCAATCTTCTGGGCGCCGAT
TTCAAGCCGCAGATGGTAAGCCGCAGCCACGTGGCAACCGTATCGCTACG
CCGCACGGAGATCAAAATTGTGGGCGTCAAGCTGAACACCCTGGAGCTGG
AGACGAAGGGCGTGGGCGCTTTTCCGCTGGCTGGTCTCAGCTGTGGCGGT
ATGCAAGTGAGCCGAATCAGGGACTCCTATACGAAGGCACTCAAGGCACT
GGTGGAGTTCGCCTCCCTGGAATACCAAGTGCGAATGCTGGAGGCGGCCT
CGTTGCAGACCAACATGAGGGTCAATGCTCTGGAGCATGTGGTAATACCC
ATCCTGCAAAATACCTATAACTATATATGCGGCGAGTTGGAGGAGTTCGA
GCGCGAGGATTTCTATCGCCTGAAACGCTCCCAGGCGAAGCAGCTGGAGG
CCAAGATGGCCTTCACCGAGCTGATCAAGACCAAGAACATGACCGACGAG
GAGCTGGAGACCTACATAAAGCGAAACATAAATCAGACGCGTCCTCCAGC
GGCCGACACACCCTTCGATCAGGAGCAGTTCGAGGAGCGTGAGGTGAAGC
GGCGCATGCGGGAGGCCCGTCTGTCCCTAAAGCAGCGCCGCGAGCAGGAG
AGAAAGGAGGCCATCAAGCGGGGCGAGCCCCCACCGCCCACATCCTTCAT
CACCACCCACGGAGCCTCGTTGAGTTTCGCTGGTCGCCAGCGGGATCCGC
GAGCCAGCAGTGGTGATCTGTACAGCACCAAGCGGATGCTCCTCTCCTCC
GGACCGGAAAGGAAGTCCGCCAGTAATGTGACCGAAAGGAAGTCCGATAC
TCCTCCGCGTAATAGCCAGGAAACTCAGCGCAGATCCAGCCAGATGTCGA
AAGATGTCGTAAATGAAGATCCACCCGAAGAAAGTTAGAAGCTTTCTAGA
CCAT
BS32473.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:44:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vha36-2-RA | 1122 | CG13167-PA | 1..1122 | 17..1138 | 5580 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:44:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vha36-2-RA | 1296 | CG13167-RA | 73..1195 | 16..1138 | 5585 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:44:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12257954..12258551 | 541..1138 | 2990 | 100 | Plus |
| 2R | 25286936 | 2R | 12257354..12257884 | 16..546 | 2625 | 99.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 13:44:14 has no hits.
BS32473.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-05-23 11:04:20 Download gff for
BS32473.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha36-2-RA | 74..1195 | 17..1138 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:13:33 Download gff for
BS32473.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha36-2-RA | 74..1195 | 17..1138 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:33:55 Download gff for
BS32473.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha36-2-RA | 74..1195 | 17..1138 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:33:55 Download gff for
BS32473.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12257355..12257879 | 17..541 | 99 | -> | Plus |
| 2R | 12257955..12258551 | 542..1138 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:13:33 Download gff for
BS32473.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8144860..8145384 | 17..541 | 99 | -> | Plus |
| arm_2R | 8145460..8146056 | 542..1138 | 100 | | Plus |
BS32473.pep Sequence
Translation from 16 to 1137
> BS32473.pep
MAKRDILPIFPSRANSVIMKQRVLAARRGVGLLKRKRDAIDMKLRELRRI
RFDQDMHGDEAMRNAIFSMAKANLLGADFKPQMVSRSHVATVSLRRTEIK
IVGVKLNTLELETKGVGAFPLAGLSCGGMQVSRIRDSYTKALKALVEFAS
LEYQVRMLEAASLQTNMRVNALEHVVIPILQNTYNYICGELEEFEREDFY
RLKRSQAKQLEAKMAFTELIKTKNMTDEELETYIKRNINQTRPPAADTPF
DQEQFEEREVKRRMREARLSLKQRREQERKEAIKRGEPPPPTSFITTHGA
SLSFAGRQRDPRASSGDLYSTKRMLLSSGPERKSASNVTERKSDTPPRNS
QETQRRSSQMSKDVVNEDPPEES*
BS32473.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:19:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vha36-2-PA | 373 | CG13167-PA | 1..373 | 1..373 | 1868 | 100 | Plus |
| Vha36-3-PC | 249 | CG8310-PC | 1..238 | 1..238 | 395 | 37 | Plus |
| Vha36-3-PB | 249 | CG8310-PB | 1..238 | 1..238 | 395 | 37 | Plus |
| Vha36-1-PA | 246 | CG8186-PA | 1..214 | 1..214 | 388 | 40.5 | Plus |
