BS32491.complete Sequence
3191 bp assembled on 2013-09-16
GenBank Submission: KX801178
> BS32491.complete
GAAGTTATCAGTCGACATGTCTTTTTGGTTACATTTTGTACTGAAAAAAA
TTTTACCATGGCTCAAATCTACGAAAATTGATGTGAATCTTACAAATCTG
CATATTGGAGATAGGATATTGGAGGTGAACGGCACACCAGTTAGTGATTC
GTCCGTGGAACAGATCGACAAATTGATACGGAGTAATGAGAAGATGCTTC
AGCTGACCGTGGAGCATGATCCGGTGCAAGTGTGCCGCTCCTGCAGCCAA
GCGGACATCCAGCGGGCCATGTCAGCGTCCACGTTAATCCTGCCGCTCAG
CACATCGGCCTCCAGTGTCGAGGTGGGCAGGGAGCGTCTGTACAAGACAC
CCGGCGAACAGGGCACGAAGGCCAGGAAACTGCGACAAGCCACCAATGCC
TCTACGACAATACCACCGGCAGCTGGAGCCACCGCAATGACGCAACTAAA
GGAGAAGGAGCGTTGTTCCAGTCTGTCCAAGTTGCTGGATGAACAGCATC
AGGCACAACAGCATTCGGCGCATCCTCAGCTCTATGATCTGTCCAGGACG
CAATCCTGCCGTGTCGTCCAAAAGCCACAACGAATCTTTCGTGCAACTGA
TCTGGTTATAGGAGAGAAGCTAGGCGAGGGCTTCTTTGGCAAGGTTTTCA
AGGTGACCCACCGTCAGAGCGGCGAGGTGATGGTCCTCAAAGAACTGCAT
CGTGCGGATGAGGAAGCGCAAAGGAATTTCATCAAGGAAGTGGCCGTTCT
CCGTTTGCTGGACCATCGGCATGTGCTCAAATTCATTGGTGTTCTGTACA
AGGATAAGAAACTGCACATGGTCACGGAGTACGTGGCCGGTGGTTGTCTC
AAGGAGCTGATCCACGATCCAGCCCAAGTACTCCCTTGGCCCCAGCGCGT
CCGCTTGGCCAGGGATATTGCGTGCGGCATGAGCTATCTGCACTCGATGA
ACATCATCCATCGCGATTTGAACTCAATGAATTGCCTGGTCCGTGAAGAT
CGCTCGGTCATAGTGGCGGATTTTGGACTAGCTCGCAGTGTGGATGCGCC
GCGGCTGCCAAGTGGCAATATGACGCCAGGCGGCTATGGATCAGGCGCTA
ACAGCGATGCGCCCATGTCACCGAGTGGAACACTAAGGCGCAGCAAGAGC
AGGCAGCGAAGGCAACGTTACACGGTGGTCGGGAATCCCTACTGGATGGC
ACCCGAGATGATGAAAGGTCTCAAATACGACGAAAAGGTGGATGTCTTCT
CCTTTGGCATTATGTTGTGTGAGATCATTGGACGCGTGGAAGCCGATCCG
GATTTTATGCCTCGCAATTCGGACTTCAGTCTCAATCAGCAGGAGTTTCG
CGAGAAGTTCTGCGCTCAGTGTCCAGAGCCTTTCGTTAAAGTGGCCTTCG
TGTGCTGTGATCTTAATCCCGATATGCGTCCGTGTTTCGAAACTCTGCAC
GTTTGGCTGCAGCGTCTCGCCGATGATCTGGCCGCCGATCGTGTGCCGCC
AGAGCGTCTGCTGCACGAGATTGAGACCTTTCAGGAATGGTACGCCAGCT
CTGAGGACGCCTTGTCACCCACCTCCCAGCGCAGCTTAAATAATCTCGAT
GAGTTGGTCAAGAGTGCGGTGGATTCGGAAATTTCGCCGGTAGAAAAAGA
GAAGGAGAATATGGTGATTAAGCCCCAGGATATACCGAAATCTCCGCATC
TCGGCAAGGATTTCTCGCCCAGCGGCGAGAGACTGCGTGACAGTATGCGG
GCCAGGCGTCGCCAACGTTTCTTGGGCGCCCAGGAGGAGCGTCGTAATCT
CACGCCCGACACGGAGTCCAAGGAAAGGGCTTTGAAGAAGGCGCTGAAGA
AATGTCGTCCGTTTGGCGAAAGAGGTTACCTGGTGGATCTGCGTGCCGGT
GCCGAATTGCAGCTAGAGGATGTCAGGGATTTGAACACCTATTCCGATGT
GGACTCCAGTTGCGATACTAGCCTAAATTACCATGATGTAAATAATCTGC
CAGCAGCGCAAGAGGATGAGAATACAGTGAAACCGGGCAAGGAAGAACTG
TTGGAGGAGAGCACAAATAAACCCAGCAACCAGGAGTCACAACACCATCG
TCTGGCCATCGATGATATGCGCACCCGCCTGAATCAGTGCCGCAGCAAAT
TCGAGCATTTGGAGGAGGCTAGTCGGCGGAACTTCAACCAGTCGCAGCAC
TCCATGAAGAACTTTTTCAAAACCCCACCGGTGGCCCTTAAGATGTTTCA
GCGCCTGGAGCACGAGGCTGCAGCCCTGAATGGTGGCAACAATTGCCCAC
CGCCACCACCACGTACGCAGCGCATCAATCAGACGCCCATTTTCGGTCGA
AAGAATCCGCCAGTGGCAATCGTCGGGCAAAAACTACAGCATGCTGAGTC
CCTAGAGGACCTGGCCTCCAGCGGAGTTGCCAAACAGCTGGCCACACCAG
CACCCAAACGCAGCAAAGCCACAGCAACGACCAAAGGCGGCCAGAGCAGC
AATCCGCCACTTTTCCTGCCGCCTAGCCTTAACATAAGTGTCGCATTAAA
TAGCAATGGAAATGTGACCACAACGACCAATACCAATAGTAGTTGTCCAC
CATCCGCATCAGATTGGCTGCCGAAGAAGCACAAGCTAACTTTGCCACTT
CCGTCGGCCCAACAGCAGCGAACGAGCAGCAATCATCGCCTGCCAATGTG
CAATAACAAAGGGAAGACACTGAAGCCACTGCCAAGTCGCACGGGCAGTC
AAGGCATTCCCGCAAGCAATTGCGTCTCGCCGACGAGGAGCAGCAGGCCC
GGATCACCCACCAAGCATCTGGCCCAGAGGCACACAGCCGCCACGGCGCA
GCGACTGACAAATGCGGCCGCCACTCACCAGCAGCAGCATCAGCAACAAT
CCTCGAAGACGACGCGCCTGAATATCCTGAGTCCGGAAAAGGTGCATCGC
CTGGGCGCTCGACTCACCGATCAGAAGCAGAAAATGCGCGAGGAGGCCGC
AGCGACGGCCTCGTCCGTCGGAGGAGCCGGTTGTGCGGCAGGAACAGCGG
CTGGAAGCTTAAATGGTCATCGGACCATCGGATCCTCCGGCACACCGAAT
TCGGCGGTCGGTGAACGGAGGAGGCGAGCAGCTCCATCGCCGCCAGTTCG
CACGCATTTCAATACGCGCTGCTAGAAGCTTTCTAGACCAT
BS32491.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:47:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| LIMK1-RD | 3159 | CG1848-PD | 1..3159 | 17..3175 | 15780 | 100 | Plus |
| LIMK1-RE | 3708 | CG1848-PE | 608..3708 | 75..3175 | 15490 | 100 | Plus |
| LIMK1-RA | 3708 | CG1848-PA | 608..3708 | 75..3175 | 15490 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:47:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| LIMK1-RD | 4814 | CG1848-RD | 102..3260 | 17..3175 | 15780 | 100 | Plus |
| LIMK1-RE | 4520 | CG1848-RE | 907..4007 | 75..3175 | 15490 | 100 | Plus |
| LIMK1-RA | 4964 | CG1848-RA | 870..3970 | 75..3175 | 15490 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:47:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12586310..12587902 | 2864..1272 | 7950 | 99.9 | Minus |
| X | 23542271 | X | 12587970..12589167 | 1273..76 | 5990 | 100 | Minus |
| X | 23542271 | X | 12585939..12586250 | 3175..2864 | 1560 | 100 | Minus |
| X | 23542271 | X | 12589524..12589582 | 75..17 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:47:45 has no hits.
BS32491.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 11:49:25 Download gff for
BS32491.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LIMK1-RD | 102..3260 | 17..3175 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:35:16 Download gff for
BS32491.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LIMK1-RD | 102..3260 | 17..3175 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:35:16 Download gff for
BS32491.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12585939..12586249 | 2865..3175 | 100 | <- | Minus |
| X | 12586310..12587900 | 1274..2864 | 99 | <- | Minus |
| X | 12587970..12589167 | 76..1273 | 100 | <- | Minus |
| X | 12589524..12589582 | 17..75 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 11:49:25 Download gff for
BS32491.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12479972..12480282 | 2865..3175 | 100 | <- | Minus |
| arm_X | 12480343..12481933 | 1274..2864 | 99 | <- | Minus |
| arm_X | 12482003..12483200 | 76..1273 | 100 | <- | Minus |
| arm_X | 12483557..12483615 | 17..75 | 100 | | Minus |
BS32491.pep Sequence
Translation from 16 to 3174
> BS32491.pep
MSFWLHFVLKKILPWLKSTKIDVNLTNLHIGDRILEVNGTPVSDSSVEQI
DKLIRSNEKMLQLTVEHDPVQVCRSCSQADIQRAMSASTLILPLSTSASS
VEVGRERLYKTPGEQGTKARKLRQATNASTTIPPAAGATAMTQLKEKERC
SSLSKLLDEQHQAQQHSAHPQLYDLSRTQSCRVVQKPQRIFRATDLVIGE
KLGEGFFGKVFKVTHRQSGEVMVLKELHRADEEAQRNFIKEVAVLRLLDH
RHVLKFIGVLYKDKKLHMVTEYVAGGCLKELIHDPAQVLPWPQRVRLARD
IACGMSYLHSMNIIHRDLNSMNCLVREDRSVIVADFGLARSVDAPRLPSG
NMTPGGYGSGANSDAPMSPSGTLRRSKSRQRRQRYTVVGNPYWMAPEMMK
GLKYDEKVDVFSFGIMLCEIIGRVEADPDFMPRNSDFSLNQQEFREKFCA
QCPEPFVKVAFVCCDLNPDMRPCFETLHVWLQRLADDLAADRVPPERLLH
EIETFQEWYASSEDALSPTSQRSLNNLDELVKSAVDSEISPVEKEKENMV
IKPQDIPKSPHLGKDFSPSGERLRDSMRARRRQRFLGAQEERRNLTPDTE
SKERALKKALKKCRPFGERGYLVDLRAGAELQLEDVRDLNTYSDVDSSCD
TSLNYHDVNNLPAAQEDENTVKPGKEELLEESTNKPSNQESQHHRLAIDD
MRTRLNQCRSKFEHLEEASRRNFNQSQHSMKNFFKTPPVALKMFQRLEHE
AAALNGGNNCPPPPPRTQRINQTPIFGRKNPPVAIVGQKLQHAESLEDLA
SSGVAKQLATPAPKRSKATATTKGGQSSNPPLFLPPSLNISVALNSNGNV
TTTTNTNSSCPPSASDWLPKKHKLTLPLPSAQQQRTSSNHRLPMCNNKGK
TLKPLPSRTGSQGIPASNCVSPTRSSRPGSPTKHLAQRHTAATAQRLTNA
AATHQQQHQQQSSKTTRLNILSPEKVHRLGARLTDQKQKMREEAAATASS
VGGAGCAAGTAAGSLNGHRTIGSSGTPNSAVGERRRRAAPSPPVRTHFNT
RC*
BS32491.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:41:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| LIMK1-PD | 1052 | CG1848-PD | 1..1052 | 1..1052 | 5476 | 100 | Plus |
| LIMK1-PE | 1235 | CG1848-PE | 197..1235 | 14..1052 | 5377 | 99.5 | Plus |
| LIMK1-PA | 1235 | CG1848-PA | 197..1235 | 14..1052 | 5377 | 99.5 | Plus |
| LIMK1-PF | 1043 | CG1848-PF | 11..1043 | 20..1052 | 5367 | 99.9 | Plus |
| LIMK1-PC | 1257 | CG1848-PC | 225..1257 | 20..1052 | 5367 | 99.9 | Plus |
