BS32494.complete Sequence
1775 bp assembled on 2013-11-09
GenBank Submission: KX801736
> BS32494.complete
GAAGTTATCAGTCGACATGACGTCGATTGTGGAGATGCCAAGGGCAAATT
TAGAGGAGGCCTTGCCACCATGGATGAAGATAGACTGGTCGGACGAGGTG
CTCCACGACATTTACAGGGACTGGGGAACCTACTATTCCCGCCGCCGTCG
GGAGAACTTCGCATTGCACTATCTAAACAAGGCACTCGCATTGGAGCCAA
CGGATCACATGACCCTCTACAAACGATGCCAGAGCAAGAGGAAGGCTGCC
CAGATGCTGGGTGCGCTGGATGACAGCCGGGCAGCTGCCAAGCTAGCACG
CAGTAAGGATGGCGAGGAAAAGGCCATAATCAATCTCGATATTTGTGATG
TACTCTACGAACTAAACCAGTTCGAAAACAGCAAGGCTGAGATGCACAAT
AATATGCGAGTGTTTATTGGTAATAAAAGAAAGAGCTTCGAGCAGCGCCA
GTTGGTGGTGGATGGTGTGATCAAAGATGTGACTGGTGAGGCCATGTCAG
CATTCTTTACCAAGAATTTGAAGACCGTCAGCATTGTTCACGATTTGATC
AAGGAAAGGGAAAGGGTCGATAATCGACCCTTGTGGAAGAGACTGAAGGA
GCAGGGCAAGTGCGATGTGCAGAGTATTCCAGAGGTTCCTGAGGAGATGC
TCTCGCCCATGGAGATTGCTCGCCGGAAGCGTGCCTTTAACATCTTCCAC
CAGAGTTACATCAACGACTCCTGGATCGATGTGCTCTTCATGAAGATGCT
GTGCAAGAATCCAAACCTTTTGCTACCCCAGTGCAAGGAGTCCTCATACT
TCCTTCAGCAGCTTTCTAGCAAGCAATACGAGATTGTTCGCAAGTTTATG
AAAATGCTGCAGTCCCGCTCCCCACTTTACCTGGTCAATTATCTGAAATA
CGGCAATAAAGCCATGTCGGATAAATACCGTGAGGCTTACCTGTTCCGCG
TACAATATCAGACACATCGTAACATGAACCATGCTCTGAAGGAGATTAGG
GCACTCCGCAAGGCCAAGAAGGTTCAGCAATTGGCGAAATTCGTCGAGGA
GCTAATGGGCACATATGTGGTCCTGAAGACGGCCCGTGTGATGTGTTGGA
AATTTGAGTTCCTTAACGAGGTGTACAACACAATGGCTTTGACTTTGGCC
GAACAGCTTCGAGTGCCCAAAGGCTTTACGCCCTATGGTAGTAATGCTAT
ACTAAAGCTGCTTCGTCTGCCAGTGGAAAGGGTCAAGGATTTTGTTCCCG
TGACATTTGGGGACCGAGCACCAGAGCCGGAGGGCAACGATCCAGCAACT
ACAAGGGCCAAGAGGCTAACTGCGCGCCTGGAACATCGAATGGTCTTTGC
CAAGTATTCAATCGAAAAGTGTTATTTGTTGCACCAGATTTCGCAATCTT
ATTTGGACCAAGGGCGTCATTCAGAGTGCACTTACAATGCTCGCAAGGCA
ATTAAAGAGAGCAAGAACTGCAATAGCAATCTGTGGAAGTTCCTCAGTGT
GGTTCAGATAGTCAAGGCCAATGCCATTCTGCACAAGCTGGAACAGACCA
AGGAAGCCCTAGAAGATGCTCTGCCCATTGCCCATTTTCTGAAATCTTCA
GAGTTGATTCTCTTCATAGAGAACTGCATGGCATGCAACACGGAGGATTC
GATCAACAAGCGGGCCACCCTAATGCAGGCTCGCCGCGTGAGCAAGTCCG
AATCTGTTGCCACCCACTCGCTGGTCAGCGGCCAGGATGTCGACTCCCAA
GGTGGTTAAAAGCTTTCTAGACCAT
BS32494.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:32:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15128-RA | 1743 | CG15128-PA | 1..1743 | 17..1759 | 8685 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:32:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15128-RA | 2011 | CG15128-RA | 197..1939 | 17..1759 | 8685 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:32:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19686889..19687282 | 850..457 | 1970 | 100 | Minus |
| 2R | 25286936 | 2R | 19685686..19685989 | 1759..1456 | 1490 | 99.3 | Minus |
| 2R | 25286936 | 2R | 19686274..19686560 | 1312..1026 | 1435 | 100 | Minus |
| 2R | 25286936 | 2R | 19687609..19687882 | 290..17 | 1370 | 100 | Minus |
| 2R | 25286936 | 2R | 19686646..19686823 | 1027..850 | 890 | 100 | Minus |
| 2R | 25286936 | 2R | 19687370..19687538 | 459..291 | 845 | 100 | Minus |
| 2R | 25286936 | 2R | 19686068..19686213 | 1457..1312 | 730 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:32:42 has no hits.
BS32494.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-11-09 12:26:01 Download gff for
BS32494.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15128-RA | 197..1937 | 17..1757 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:16:41 Download gff for
BS32494.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15128-RA | 197..1937 | 17..1757 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:16:41 Download gff for
BS32494.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19687609..19687882 | 17..290 | 100 | | Minus |
| 2R | 19685688..19685987 | 1458..1757 | 99 | <- | Minus |
| 2R | 19686068..19686213 | 1312..1457 | 100 | <- | Minus |
| 2R | 19686275..19686558 | 1028..1311 | 100 | <- | Minus |
| 2R | 19686646..19686822 | 851..1027 | 100 | <- | Minus |
| 2R | 19686889..19687281 | 458..850 | 100 | <- | Minus |
| 2R | 19687372..19687538 | 291..457 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-11-09 12:26:01 Download gff for
BS32494.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15573193..15573492 | 1458..1757 | 99 | <- | Minus |
| arm_2R | 15573573..15573718 | 1312..1457 | 100 | <- | Minus |
| arm_2R | 15573780..15574063 | 1028..1311 | 100 | <- | Minus |
| arm_2R | 15574151..15574327 | 851..1027 | 100 | <- | Minus |
| arm_2R | 15574394..15574786 | 458..850 | 100 | <- | Minus |
| arm_2R | 15574877..15575043 | 291..457 | 100 | <- | Minus |
| arm_2R | 15575114..15575387 | 17..290 | 100 | | Minus |
BS32494.pep Sequence
Translation from 16 to 1758
> BS32494.pep
MTSIVEMPRANLEEALPPWMKIDWSDEVLHDIYRDWGTYYSRRRRENFAL
HYLNKALALEPTDHMTLYKRCQSKRKAAQMLGALDDSRAAAKLARSKDGE
EKAIINLDICDVLYELNQFENSKAEMHNNMRVFIGNKRKSFEQRQLVVDG
VIKDVTGEAMSAFFTKNLKTVSIVHDLIKERERVDNRPLWKRLKEQGKCD
VQSIPEVPEEMLSPMEIARRKRAFNIFHQSYINDSWIDVLFMKMLCKNPN
LLLPQCKESSYFLQQLSSKQYEIVRKFMKMLQSRSPLYLVNYLKYGNKAM
SDKYREAYLFRVQYQTHRNMNHALKEIRALRKAKKVQQLAKFVEELMGTY
VVLKTARVMCWKFEFLNEVYNTMALTLAEQLRVPKGFTPYGSNAILKLLR
LPVERVKDFVPVTFGDRAPEPEGNDPATTRAKRLTARLEHRMVFAKYSIE
KCYLLHQISQSYLDQGRHSECTYNARKAIKESKNCNSNLWKFLSVVQIVK
ANAILHKLEQTKEALEDALPIAHFLKSSELILFIENCMACNTEDSINKRA
TLMQARRVSKSESVATHSLVSGQDVDSQGG*
BS32494.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:43:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15128-PA | 580 | CG15128-PA | 1..580 | 1..580 | 3000 | 100 | Plus |
| CG7634-PA | 579 | CG7634-PA | 1..569 | 1..564 | 1462 | 51 | Plus |
| r-cup-PA | 594 | CG10998-PA | 9..561 | 8..558 | 959 | 38.9 | Plus |
| wa-cup-PB | 580 | CG10113-PB | 11..548 | 5..549 | 884 | 36.8 | Plus |
| p-cup-PA | 538 | CG12993-PA | 61..532 | 110..573 | 617 | 31.4 | Plus |
