BS32515.complete Sequence
1097 bp assembled on 2013-09-16
GenBank Submission: KX800495
> BS32515.complete
GAAGTTATCAGTCGACATGCCAGCACGACGAAGTGAAAGGATTGCGGCAC
GTGGGGATGCTAATGGTAGCCCAACAAACGAGTCCAACACGGGACCTGTG
GGAAGAGTTCGCCGTGGTACGAACTCAAGGGACCAGTCCGATAGACCACG
TGGTGGCCGTGCAGCCCCCAGGGGCAGGCGAACTATTGTTCGTCCTGAAA
TTCGTTTTTCGACACCGACAATGGACGAAAGACAACGTGCGAGAATCGAG
GCTATGGCTGCGATAGCTGCTGGTACAGATTCTGAGGATACTGAAGGATC
TGCCGAAGAAGTCCGCTCTCAATCATTCTTTGCTGTTTCTGTTTTTTTGA
CTGCCCGACTGGGAACTCCTGGTCGTCGAGCAACTAGTACACCAGCCGCT
GTCCCGTCACGTCGTGGCCGCAGGACGGTTTCAATTTCAGTAGCTACACC
TTCGAATCCGCCTGTTCGGGCCACTGTAATACGCCAAGGTTCACAGATGC
ACCTAACCAGAGGTCTACCAACTGTGACTGAAAATGTGCCAATGGACGAA
ACTTTTGACACTGAGTCGTTGCAAAGCAACTCTCTGGTGCTAAGACTTTT
TCGCATCGAATCCGGAATACCCACCCAAGGTGATCCCCTCACCATCACTA
GGCTCCGTCGAGAGATCTCAGAGTTCTCAACCGATCAAACGGAAGGGTGT
AAGGCGGAGATGGTGGGCGACAATCTGTTCCACTGGGTAGCCACGATCCC
AGGTCCCTCGGAAACAGTTTACGAAGGTGGGCGTTTTAGAGTGGAGATAG
TCTTTCCCAGGAACTATCCATTTTATCCCCCCTATCTTGCGTTTTTAACC
AAGACTTACCACTGCAACATCGCTTTATCTGGGCGCATTTGCCTGGATAT
TCTCGGCTCGAAGTGGTCGCCAGCTTTGTCGGTTTCCAAGGTACTTATAT
CCATAATGTCATTGCTGGCAGACCCGAATCCACACGATCCTATGGAGGTA
TCCGTAGCAGATGTTTTCAAGGGAAACCGTGCCCTCCACGACAAGAATGC
ACGCGAATGGACCAAAAAATATGCCAAGTGAAAGCTTTCTAGACCAT
BS32515.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:56:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10862-RA | 1065 | CG10862-PA | 1..1065 | 17..1081 | 5325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:56:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10862-RA | 1201 | CG10862-RA | 77..1142 | 17..1082 | 5330 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:56:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3653464..3654329 | 1082..217 | 4330 | 100 | Minus |
| 3L | 28110227 | 3L | 3654436..3654636 | 217..17 | 1005 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:56:33 has no hits.
BS32515.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 12:02:15 Download gff for
BS32515.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10862-RA | 77..1140 | 17..1080 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:38:01 Download gff for
BS32515.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10862-RA | 77..1140 | 17..1080 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:38:01 Download gff for
BS32515.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3653466..3654328 | 218..1080 | 100 | <- | Minus |
| 3L | 3654436..3654636 | 17..217 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 12:02:15 Download gff for
BS32515.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3653466..3654328 | 218..1080 | 100 | <- | Minus |
| arm_3L | 3654436..3654636 | 17..217 | 100 | | Minus |
BS32515.pep Sequence
Translation from 16 to 1080
> BS32515.pep
MPARRSERIAARGDANGSPTNESNTGPVGRVRRGTNSRDQSDRPRGGRAA
PRGRRTIVRPEIRFSTPTMDERQRARIEAMAAIAAGTDSEDTEGSAEEVR
SQSFFAVSVFLTARLGTPGRRATSTPAAVPSRRGRRTVSISVATPSNPPV
RATVIRQGSQMHLTRGLPTVTENVPMDETFDTESLQSNSLVLRLFRIESG
IPTQGDPLTITRLRREISEFSTDQTEGCKAEMVGDNLFHWVATIPGPSET
VYEGGRFRVEIVFPRNYPFYPPYLAFLTKTYHCNIALSGRICLDILGSKW
SPALSVSKVLISIMSLLADPNPHDPMEVSVADVFKGNRALHDKNAREWTK
KYAK*
BS32515.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:44:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10862-PA | 354 | CG10862-PA | 1..354 | 1..354 | 1823 | 100 | Plus |
| eff-PC | 147 | CG7425-PC | 1..146 | 208..353 | 411 | 51.4 | Plus |
| eff-PB | 147 | CG7425-PB | 1..146 | 208..353 | 411 | 51.4 | Plus |
| eff-PA | 147 | CG7425-PA | 1..146 | 208..353 | 411 | 51.4 | Plus |
| CG5440-PC | 169 | CG5440-PC | 4..167 | 194..354 | 411 | 48.2 | Plus |
