BS32520.complete Sequence
734 bp assembled on 2013-09-16
GenBank Submission: KX804230
> BS32520.complete
GAAGTTATCAGTCGACATGACAGACTTCAGCATTGCCAAGTTTAACAACT
ATCAGGAGTATCTGCACTCCTTTACGACCGTCGAGGACTTTCGGTACTTA
CCTTTCCACAAAACGGTCATTACTCTCACAAAACTCGGCTATCGGGAACA
CCGCACTTTCTACGAGGAGGATGAGTTCTTAAACGTGAAAAAGCAGGTGG
AACAGCTCCTGAATCCAACGGTTTCTGCCCAGATATACTACAGTCAGTAC
TTCAAGGGAACCGATCCAGCACTTTGGGCATTGGCCGAACGCGAGCACGG
GAATGTCCAGCAGGAGATATCGACCATTATCTTTCTGGAAATAAGCGGAC
GAAGTGGGTTCTCCAAGTCAGGCTACATTGACTTTGAGGCCAGTCTGCGA
AACTACCGGTTCAAGGGACCAAATGCAGTCGATTGGAAGGCGGTTTTCGA
GGAGCGGAAGTTGCTGAAGCCCCAGCCGAGTGATATAGTCTTCTACGACT
GGAAGACCAGGAAGATTTTTGCGAATGACAACGACAATTATACGGTGGTA
GCTCATCCGGAACATGGTCTTATGTTTGCTCACAAGGGAGATCACAAGAA
CATACCCGTTACCACCAAGAAGAACCCCTTTTCCAGCAACGTTAGACGCT
CTATGATCAGGTCAAATCTATATGGTTTCATTATACTGTACGACCACCAC
GTTCGTAAGAAGACTTAGAAGCTTTCTAGACCAT
BS32520.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:56:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8138-RA | 702 | CG8138-PA | 1..702 | 17..718 | 3510 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:56:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8138-RA | 795 | CG8138-RA | 42..745 | 16..719 | 3520 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:56:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13181707..13182104 | 322..719 | 1990 | 100 | Plus |
| 3R | 32079331 | 3R | 13181345..13181651 | 16..322 | 1535 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 13:56:47 has no hits.
BS32520.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 12:02:21 Download gff for
BS32520.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8138-RA | 43..744 | 17..718 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:38:07 Download gff for
BS32520.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8138-RA | 43..744 | 17..718 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:38:07 Download gff for
BS32520.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13181346..13181651 | 17..322 | 100 | -> | Plus |
| 3R | 13181708..13182103 | 323..718 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 12:02:21 Download gff for
BS32520.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9007068..9007373 | 17..322 | 100 | -> | Plus |
| arm_3R | 9007430..9007825 | 323..718 | 100 | | Plus |
BS32520.pep Sequence
Translation from 16 to 717
> BS32520.pep
MTDFSIAKFNNYQEYLHSFTTVEDFRYLPFHKTVITLTKLGYREHRTFYE
EDEFLNVKKQVEQLLNPTVSAQIYYSQYFKGTDPALWALAEREHGNVQQE
ISTIIFLEISGRSGFSKSGYIDFEASLRNYRFKGPNAVDWKAVFEERKLL
KPQPSDIVFYDWKTRKIFANDNDNYTVVAHPEHGLMFAHKGDHKNIPVTT
KKNPFSSNVRRSMIRSNLYGFIILYDHHVRKKT*
BS32520.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:44:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8138-PA | 233 | CG8138-PA | 1..233 | 1..233 | 1243 | 100 | Plus |
| CG14013-PA | 241 | CG14013-PA | 9..240 | 3..232 | 392 | 36.6 | Plus |
| CG14017-PA | 238 | CG14017-PA | 26..237 | 12..232 | 324 | 33.9 | Plus |
| CG3528-PA | 235 | CG3528-PA | 2..233 | 5..231 | 319 | 31 | Plus |
