BS32527.complete Sequence
1718 bp assembled on 2013-11-09
GenBank Submission: KX801671
> BS32527.complete
GAAGTTATCAGTCGACATGCGAAAGAATACCATTTGGAACTACTCTTTAA
TATTCTTCTGCTGTGTGCTGAAGAGCATAAGTACGCTAGATCATGGCCCG
CACACAGTATCAGTCGATTCGAATCGACACAACACACAGCATCAGTATAA
GCAAAATCCCAATGTTGCCTCACAACGTCACTCATCCCACGAATCTGGTC
AGAGTTTACACAATTCGCAATCGGAACATGTCACCCATATTGCCGCATCG
CACGCCGGAAGCGGCGGAGAGCACTCCACTCATTTGGCGCAAAATCTGCA
CAGGAGCTCATATAATCTTCTGAGCGAGGCCATGTCCCAGGCTGTCAGCA
ATGAATTTAGTTCCATGGGAAGTGGTTCAGCGGATGGAGCGTGTGCTGCT
GATGATTTTGATTGCTACAGTGGAAGTGTTCAGGATCGCTTTGGCATGGA
GGCTATTGCCAGCTTGCATCGTCAGCTAGATGATGACGATAATGGAAACA
TCGATCTGAGCGAGTCCGATGACTTTTTGCGGGAGGAATTGAAGTACGAC
TCGGGCTACGAAAAGCGGCAGAAAGCGTTTCACTTCAATGACGATATGCA
TATATCGGTCAAAGAACTTTGGGAGGCCTGGCTCAGATCGGAGGTGCATA
ATTGGACCATCGAGCAGACCACCGATTGGCTGGCTCAGTCCGTTCAGCTG
CCGCAATACGTTGATCTGTTCAAATTACACAAGGTTACTGGCGCTGCCTT
GCCAAGATTGGCTGTGAATAATCTTCAGTATGTTGGCAATGTACTTGGCA
TCAAAGACCCTATACACAAACAAAAAATCTCATTGAAGGCAATGGATGTG
GTTCTGTTTGGGCCACCGCGAGAAACTGGTACCCGCTGGAAAGACTACAT
ATTGGTAACACTGTTGCTTAGTGCTATTATTGGTTGTTGGTACGCCTATC
AGCAAAATAAGAATGCCAAACGGCATCTGCGTCGAATGGCCCAGGATATG
GAGGGATTGCAGAGGGCTGAGCAAAGTCTACAGGAGATGCAGAAGGAACT
AGAACGGGCCAGAATGGAGCAGGAAAATGTGGCAACAGAAAAACTAGATT
TGGAGCGTCGTCTAAAAGAAGCGCCCACTCTCAGTTCATCGAACTCGGAT
TTGGAAGTTCAGCAGCTGAAAAAGGAAATCGAGATGTTGCGCAACGAATT
GTCCCGCGCCGAATTCGAGCTAGTAGACAACTGCTGGTCACCGCCGCCAC
AACTGCAATCATGGCTTCAATACACATATGAACTAGAAAGTAAGAATCAT
CAGAAGAAGCGCACGTCGGCTGAGAAGCAGCTACAGTCGGCCAGAGAGGC
TTGTGAGAAATTGCGTAAGAAACGGTCAAGTTTGGTGGGTGCGTTCGTTT
CCACGCACGGAAAGAGTATTGATGATGTGGATCGGTCGATTGTTGAGGCA
CGGAATGCCCTCGGAGATGTAACAAACGAGCTGCAAGAACGACTGCATCG
CTGGAAGCAAATCGAGACGTGCCTTGGCTTAAACATTGTGAACAACAATG
GTCTGCCCTACTTGGAGAATGTTCTGTACGGTCGAAATGGGGGCTTACAA
AGTTCCATGGGCATGAGTTCAACCAAGGGTTCTAGAGCACGTATTACCAA
CAGCACCGAAGACCTGGACGATGAGTCCATACAAGGTTTTGGAATTCCAT
AAAAGCTTTCTAGACCAT
BS32527.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:33:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Stim-RD | 1686 | CG9126-PD | 1..1686 | 17..1702 | 8430 | 100 | Plus |
| Stim-RA | 1713 | CG9126-PA | 1..1671 | 17..1687 | 8355 | 100 | Plus |
| Stim-RF | 354 | CG9126-PF | 1..345 | 17..361 | 1725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:33:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Stim-RD | 2141 | CG9126-RD | 193..1878 | 17..1702 | 8430 | 100 | Plus |
| Stim-RA | 2255 | CG9126-RA | 193..1863 | 17..1687 | 8355 | 100 | Plus |
| Stim-RF | 2319 | CG9126-RF | 600..1927 | 360..1687 | 6640 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:33:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15935417..15936010 | 1637..1044 | 2970 | 100 | Minus |
| X | 23542271 | X | 15938756..15939100 | 361..17 | 1725 | 100 | Minus |
| X | 23542271 | X | 15936792..15937031 | 763..524 | 1170 | 99.2 | Minus |
| X | 23542271 | X | 15936075..15936250 | 1046..871 | 880 | 100 | Minus |
| X | 23542271 | X | 15937591..15937754 | 523..360 | 820 | 100 | Minus |
| X | 23542271 | X | 15936319..15936436 | 872..755 | 590 | 100 | Minus |
| X | 23542271 | X | 15935293..15935344 | 1687..1636 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:33:53 has no hits.
BS32527.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-11-09 12:26:30 Download gff for
BS32527.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Stim-RD | 193..1876 | 17..1700 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:17:09 Download gff for
BS32527.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Stim-RD | 193..1876 | 17..1700 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:17:09 Download gff for
BS32527.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15938758..15939100 | 17..359 | 100 | | Minus |
| X | 15935295..15935342 | 1638..1685 | 100 | <- | Minus |
| X | 15935417..15936008 | 1046..1637 | 100 | <- | Minus |
| X | 15936076..15936248 | 873..1045 | 100 | <- | Minus |
| X | 15936319..15936434 | 757..872 | 100 | <- | Minus |
| X | 15936799..15937031 | 524..756 | 100 | <- | Minus |
| X | 15937591..15937754 | 360..523 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-11-09 12:26:30 Download gff for
BS32527.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15829328..15829375 | 1638..1685 | 100 | <- | Minus |
| arm_X | 15829450..15830041 | 1046..1637 | 100 | <- | Minus |
| arm_X | 15830109..15830281 | 873..1045 | 100 | <- | Minus |
| arm_X | 15830352..15830467 | 757..872 | 100 | <- | Minus |
| arm_X | 15830832..15831064 | 524..756 | 100 | <- | Minus |
| arm_X | 15831624..15831787 | 360..523 | 100 | <- | Minus |
| arm_X | 15832791..15833133 | 17..359 | 100 | | Minus |
BS32527.pep Sequence
Translation from 16 to 1701
> BS32527.pep
MRKNTIWNYSLIFFCCVLKSISTLDHGPHTVSVDSNRHNTQHQYKQNPNV
ASQRHSSHESGQSLHNSQSEHVTHIAASHAGSGGEHSTHLAQNLHRSSYN
LLSEAMSQAVSNEFSSMGSGSADGACAADDFDCYSGSVQDRFGMEAIASL
HRQLDDDDNGNIDLSESDDFLREELKYDSGYEKRQKAFHFNDDMHISVKE
LWEAWLRSEVHNWTIEQTTDWLAQSVQLPQYVDLFKLHKVTGAALPRLAV
NNLQYVGNVLGIKDPIHKQKISLKAMDVVLFGPPRETGTRWKDYILVTLL
LSAIIGCWYAYQQNKNAKRHLRRMAQDMEGLQRAEQSLQEMQKELERARM
EQENVATEKLDLERRLKEAPTLSSSNSDLEVQQLKKEIEMLRNELSRAEF
ELVDNCWSPPPQLQSWLQYTYELESKNHQKKRTSAEKQLQSAREACEKLR
KKRSSLVGAFVSTHGKSIDDVDRSIVEARNALGDVTNELQERLHRWKQIE
TCLGLNIVNNNGLPYLENVLYGRNGGLQSSMGMSSTKGSRARITNSTEDL
DDESIQGFGIP*
BS32527.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:44:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Stim-PD | 561 | CG9126-PD | 1..561 | 1..561 | 2930 | 100 | Plus |
| Stim-PA | 570 | CG9126-PA | 1..557 | 1..557 | 2907 | 100 | Plus |
| Stim-PF | 117 | CG9126-PF | 1..117 | 1..117 | 617 | 99.1 | Plus |
| Stim-PG | 117 | CG9126-PG | 1..117 | 1..117 | 617 | 99.1 | Plus |
