BS32532.complete Sequence
3947 bp assembled on 2013-11-09
GenBank Submission: KX801261
> BS32532.complete
GAAGTTATCAGTCGACATGGCCGGAAAGTTGAAAATATGCATCATTGGGG
CTGAGGGCTGGGGCTCGGCCATTGCCGCCGTCGTGAGCAACAATGTCTTG
GAGGGAGACTTCGACAGCCGGGTGCATTTATATGTCTACGATGAAATGAT
TCGGGACACTGCCCTATCGGAGATCATAAACACTCGTCACGAGAATGTCA
AGTATCTGCCTGGGATCAAGCTGCCCAATAACCTGATCGCTGTAAATGAT
CTTTTGGAAGCTGCCCAGAACGCAGATATCTTGGTATTTTCCACCCCGCT
GGAGTTCGTGCAATCCTACTGCAACATTCTGTCTGGTAATGTTAAGGAGT
CGGCCTTTGCTGTTTCCATGACCAAAGGATTGTTGAGCGAGAATGGGGAG
GGGATTGAGCTTGTTTCGCACGCCATTAGCGAGAGTCTGGGTATCCCGTG
CTACTCTATGATGTCTGCACATAGTGCCATGGAGATGGCACAGGGAAAGC
TGTGTGAGGTGACCATCGGTTGCAGCGATAATTCTCATTCCAAGCTGCTG
ATCTCTGCTATGCAAACCAATAACTGCAGAGTTATTTCTGTTAATGACGT
TGACGGAGTAGAGCTGTGTGGAACGCTCACAGACGTCGTTGCCTTGGGAG
CGGGTTTCATAGATGGTCTGCGTCTGGGTGAGAATGCACGGTTGGCAGCC
ATCCACTTGGGTGTCAAGGAAATTATGCGGTTCATTAAGACGTTCTTTCC
TTCCTCCAAAATGTCCACATTCTATGAGAGCTGTGGCGTAACCAACGCGG
TGGCTTCCAGCTTTGTCGATAAAAACGTCACATTTGCAAAGAGCCTAGTA
ACATCAGGCCAAACCATTGAAGAAATAGAAGCAAACCTCCATAGTGGCCG
CAAGCTTTTGGGTCCCATGGTGGCCAGTAATGTGAATGCATTTTTGGAGA
ATGGGCTTATGCAACACGAATTTCCGCTTTTCACGGCCATCCATCTTATA
TGCCAAAGTGAGGCTCCGCCGGAACTGATGATAGAGGCACTGAGAAACCA
CCCGGATCTAAGCAGTTCATCCATTTCACATTTACTGAACCATGAAAGGG
ACGAGCTAAAAACGGACCAAGGCCTTCCCGAACTGAGGACTGCTTTAGAT
AAGATATTGACGGAGGCGGGGAACGAAAACATTAAGCAGCTCAAGGTTAT
GGACGATTGGACAGAAGTAAACGATTACGACGTCGAGGAGACGTACCATG
AAAAAGTGGCATCACGAGATTCCTGTCTTGAGACCGAAATTATGCCAAGC
CGTCTGAGCGTGCAAGCTGCACAGCTCTATAATGACATCCGGGATGGGAA
TGTTGGGGTGGCCTTTAAAATGGACATCGATGAAGGCAATCGCCAAGTGC
GGCTCTTGCTAGAGAAGGAAGACGAAATGGCTAGCGATGCAGCCTTGACA
GTTATTTCATCAAGATTGACTGCGGGCCAAGAGGATGACAATGCCAGGAT
AGGCCACGGACACATAACGAACACTTCCGCGGAATCCGATCATATGTCCA
GCAAAAGCATTCCCAGTGGCTTGACTACGAAGGATTCGCCTGATGTCCTG
GATTTGAGTTGCGAATCTGAGCCACTACATTCGTCAAAACAAAATAGCCA
GCTGATGGAAGATGCGGAGACAAATTTCACGGAGCGTTTAAAAGTGAATC
AACTTAAAGAGCAGATTGATAAACAAGAAGCGGCCAATTTTAAAGCCCAA
GAAAATCTTATAAAATCTATAAGACAAACAATTCAGGCTCTCGGTGATAA
AGAAAAAATGGAAAACCTTATCGCAAAAAGCAAAATGGAGGAGGACCCCT
TCCAACTGAAAAGCCAAGTTGAGTCTTCGCAACTGAAGAGCCAAGTTGAA
GGGGAGTCTTCGGAACTGAAAAACCAAATACAAGAGGAAGCTTATGAACC
TATAAGTCAAGCAGATGAGGAACCATCCCAAATTAGAAGCCAACTAGATG
AGGAATCTGCTCAGCTAAAAAGTCTAATGGACGAAGAAAATAGACAACTT
GAAAGCGAAATGCAAGACGAGAGTAGCCTATTGAAAAGTTCAGCAGATAA
ATCCGAATTTGTTGCATACAACGCGGAAGAAGAGCAACCCATTGAAGAAC
CAACAGATAACCATCAGTATAAATTAAGATCAGATACTAATAAGCTTAAA
GAACTTATGTTCACCGATTCCAGGGAGCACTTGGAGTCCGAGAAGCACAT
TGAAGTGAAACTTCAAGACGAACATGACTTTGATCTGGATGAGGAGCCAG
CTATAGGAAAAAAAGACCCTACTTACACTAAAGAGAACTTGGAGCTCCAG
GAGAGGCTCGAGTGGCAAAAGCTAAAGCAAACAGATAAACCCCACCATCC
TTATTCTTCAGCGGATCTTGAAGATTCAACTACCAATGAAGGTAACGCCA
GGCTTCCGATAGAGCATGACAATAGATTCCAGAATGTGGATAGGTATCAG
GATAGAGAACTTGTTCAAGTAAGAGCTGAGTTGAAAGAGACTAGCGGAGC
CGAGAGCGAAAAGGAGATCAACTTGATTAGCGAGCAAAGGCCGGATCAAA
ACCAAGATGAGGTCAACTTGCGCCCCCATAGCCATATCAAGACGGAAGAA
ACTGGCCATCACGAGTGGGATTGGCTAATGAACAATGAAAAGATCGATTC
CGACGAGCAAAAGTTTTATGCCAACGAGAGGATGGAAACACTTAGCGAAT
CTGACCAGGATAAGTTGCAGAATCTTAATTATCAACTAAAAGAAGCCTTG
CAGCATGATTTGGATGTGATGTCCGCAAGCAGGGGTAATGATTCAAATGA
GGTGCTGTCCGAGGAGGACTCTAATCCAGAAGCTGCTAAGAAAATTACGG
AGCAACCACTTAACCCCACTCCAAACCAAATCCCCGCAGTCCCCTTGCCA
GTAACAATGCCTAGTAAACAATCACATATCCGCGAGGGCAGTCCACAGTT
CCAGAATCAACCTAGATCTGTTCCACCACCCTCGCCACAAACAAAACCAC
AGTCGCCAAAGGAACAGCAGCCTCGCCGCACAAATGCGCCCGTCGAATTT
GGAAACAAGGACGAAGCCATGGATCTAAATGAGTCAGCTTCTGATCAAGA
GGTACCTAAGCGTAAAAAGATTTCGAAAACTGAGGCCGTGATTGAACCAG
TCGCTAAGGATGTCTCCATGGCCGAGCCAAATGAGTCGTTACATTCTAAA
AAGGAAACTTCACCAGCTAGTTTGAGTAAGCAGGAAAGCAAAAGGAAGCA
AAAAAGGAGCTTAAGGAGACCATCTAGTGATTCTGATAGCACTAAGACAA
CGAACGAATTCGAGAAGCAACGTCAGATTATAGAAAACCAGAAGGCACAG
CTGGAAAAAATGGGTAAGAAGATCAGCGTTATGCGGCAGGGTCAGGATCG
TCGGGTTAGCTACAAGGGTCATAACCCCTACAGCGCTGACCCGGATCTGG
AGTCTAGGCCACCGATGGACACCAGCTTCGAAAAGGACAGAACGGGGGAT
TACCAGGGACTGGGCCATCAGCGTCGCAAAGTAGTCGTGGCGCCGCCCTT
TCATCCGCCTATCAATCCACGAGTACGCGTGCCGCGACCACCTTTCGATG
GACGGGATCATGAGTTCCATACGATGACTACCGCGCCAGTGGACAGACAC
CTTGCTCCGGCAGCTAAGTGGTCGTCTTTGCCCACGACTCTGAAGCTGAA
TCGCAACTCCCTGGTTGCCAACATACAGGTCAAGCACTTTGCCGCTCTGC
CCTGTCAGGCGTTGCCGAAACCCATATTAAAGTTGCCGATGGGAGTGCCA
CGCACGCCCACGTTTTCAAAGATCCTCTGCGCCTTGCAGTTGGGATTGCT
GGCCTCCTACCTCGCTTGCAGGAAGGACTAAAAGCTTTCTAGACCAT
BS32532.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:34:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43343-RA | 3915 | CG43343-PA | 1..3915 | 17..3931 | 19575 | 100 | Plus |
| CG43343-RC | 3912 | CG43343-PC | 1..3912 | 17..3931 | 19495 | 99.9 | Plus |
| CG43343-RB | 3876 | CG43343-PB | 954..3876 | 1009..3931 | 14615 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:34:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43343-RA | 4187 | CG43343-RA | 152..4066 | 17..3931 | 19575 | 100 | Plus |
| CG43343-RC | 4184 | CG43343-RC | 152..4063 | 17..3931 | 19495 | 99.9 | Plus |
| CG43343-RB | 4187 | CG43343-RB | 1144..4066 | 1009..3931 | 14615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:34:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22383557..22386427 | 1061..3931 | 14355 | 100 | Plus |
| 3R | 32079331 | 3R | 22382562..22383142 | 235..815 | 2905 | 100 | Plus |
| 3R | 32079331 | 3R | 22382329..22382504 | 60..235 | 880 | 100 | Plus |
| 3R | 32079331 | 3R | 22383204..22383358 | 815..969 | 775 | 100 | Plus |
| 3R | 32079331 | 3R | 22383412..22383504 | 970..1062 | 465 | 100 | Plus |
| 3R | 32079331 | 3R | 22382225..22382269 | 17..61 | 225 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:34:06 has no hits.
BS32532.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-11-09 12:26:35 Download gff for
BS32532.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43343-RA | 152..4064 | 17..3929 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:17:14 Download gff for
BS32532.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43343-RA | 152..4064 | 17..3929 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:17:14 Download gff for
BS32532.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22383412..22383504 | 970..1062 | 100 | -> | Plus |
| 3R | 22382225..22382268 | 17..60 | 100 | -> | Plus |
| 3R | 22382330..22382504 | 61..235 | 100 | -> | Plus |
| 3R | 22382563..22383142 | 236..815 | 100 | -> | Plus |
| 3R | 22383205..22383358 | 816..969 | 100 | -> | Plus |
| 3R | 22383559..22386425 | 1063..3929 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-11-09 12:26:35 Download gff for
BS32532.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18207947..18207990 | 17..60 | 100 | -> | Plus |
| arm_3R | 18208052..18208226 | 61..235 | 100 | -> | Plus |
| arm_3R | 18208285..18208864 | 236..815 | 100 | -> | Plus |
| arm_3R | 18208927..18209080 | 816..969 | 100 | -> | Plus |
| arm_3R | 18209134..18209226 | 970..1062 | 100 | -> | Plus |
| arm_3R | 18209281..18212147 | 1063..3929 | 100 | | Plus |
BS32532.pep Sequence
Translation from 16 to 3930
> BS32532.pep
MAGKLKICIIGAEGWGSAIAAVVSNNVLEGDFDSRVHLYVYDEMIRDTAL
SEIINTRHENVKYLPGIKLPNNLIAVNDLLEAAQNADILVFSTPLEFVQS
YCNILSGNVKESAFAVSMTKGLLSENGEGIELVSHAISESLGIPCYSMMS
AHSAMEMAQGKLCEVTIGCSDNSHSKLLISAMQTNNCRVISVNDVDGVEL
CGTLTDVVALGAGFIDGLRLGENARLAAIHLGVKEIMRFIKTFFPSSKMS
TFYESCGVTNAVASSFVDKNVTFAKSLVTSGQTIEEIEANLHSGRKLLGP
MVASNVNAFLENGLMQHEFPLFTAIHLICQSEAPPELMIEALRNHPDLSS
SSISHLLNHERDELKTDQGLPELRTALDKILTEAGNENIKQLKVMDDWTE
VNDYDVEETYHEKVASRDSCLETEIMPSRLSVQAAQLYNDIRDGNVGVAF
KMDIDEGNRQVRLLLEKEDEMASDAALTVISSRLTAGQEDDNARIGHGHI
TNTSAESDHMSSKSIPSGLTTKDSPDVLDLSCESEPLHSSKQNSQLMEDA
ETNFTERLKVNQLKEQIDKQEAANFKAQENLIKSIRQTIQALGDKEKMEN
LIAKSKMEEDPFQLKSQVESSQLKSQVEGESSELKNQIQEEAYEPISQAD
EEPSQIRSQLDEESAQLKSLMDEENRQLESEMQDESSLLKSSADKSEFVA
YNAEEEQPIEEPTDNHQYKLRSDTNKLKELMFTDSREHLESEKHIEVKLQ
DEHDFDLDEEPAIGKKDPTYTKENLELQERLEWQKLKQTDKPHHPYSSAD
LEDSTTNEGNARLPIEHDNRFQNVDRYQDRELVQVRAELKETSGAESEKE
INLISEQRPDQNQDEVNLRPHSHIKTEETGHHEWDWLMNNEKIDSDEQKF
YANERMETLSESDQDKLQNLNYQLKEALQHDLDVMSASRGNDSNEVLSEE
DSNPEAAKKITEQPLNPTPNQIPAVPLPVTMPSKQSHIREGSPQFQNQPR
SVPPPSPQTKPQSPKEQQPRRTNAPVEFGNKDEAMDLNESASDQEVPKRK
KISKTEAVIEPVAKDVSMAEPNESLHSKKETSPASLSKQESKRKQKRSLR
RPSSDSDSTKTTNEFEKQRQIIENQKAQLEKMGKKISVMRQGQDRRVSYK
GHNPYSADPDLESRPPMDTSFEKDRTGDYQGLGHQRRKVVVAPPFHPPIN
PRVRVPRPPFDGRDHEFHTMTTAPVDRHLAPAAKWSSLPTTLKLNRNSLV
ANIQVKHFAALPCQALPKPILKLPMGVPRTPTFSKILCALQLGLLASYLA
CRKD*
BS32532.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:44:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43343-PA | 1304 | CG31169-PB | 1..1304 | 1..1304 | 6688 | 100 | Plus |
| CG43343-PC | 1303 | CG43343-PC | 1..1303 | 1..1304 | 6672 | 99.9 | Plus |
| CG43343-PB | 1291 | CG31169-PC | 1..1291 | 1..1304 | 6591 | 98.9 | Plus |
| Gpdh-PF | 360 | CG9042-PF | 1..354 | 1..353 | 905 | 47.7 | Plus |
| Gpdh-PB | 360 | CG9042-PB | 1..354 | 1..353 | 905 | 47.7 | Plus |
