BS32544.complete Sequence
3002 bp assembled on 2013-11-09
GenBank Submission: KX804921
> BS32544.complete
GAAGTTATCAGTCGACATGATCAAACTGCGGCCATATGTGCCCTCCAAGA
GGATTGCCATACGGGACTCGTCCATCGACGAGGATGCGAGCGACGATGTG
GAGGACGAGGTGTTCATCAAGGATGCCAGGTCGGCGAAGCGCAGCGAGGA
GCAGGGATTGAAGCGGCCCCTGATGGCGCCGCGTCGCAAACACAGTCCAG
GTTCCGGACCCGGATCCGGCTCGGGATCAACTCCGATAATGAAGCAGCAC
AGGAGGCGGCGCTGCTGCCGCTGCTGCGAACCCTTCTGCTACGCCCTGGC
CGCTCTAACGGTACTGTGCGCCCTGCTCAGCCTGGCGGCCCTCATGCTGA
CGCTCTTCCCGCTGCCGCTGCAGCGAATCCGGCACTGGTGGCGCCCCGAT
CCCGCCCAGCTGGCGGCCATCTCAGCAGGCTCCTCCCGCATCTCATATGG
CAGCTCGCTGGGCAGTGAGTTTGTTCCCTGCACCCAGATCAGTGTCCAGA
AGCGCTGGTCTCGCAGCTTGGCGCGCATGAACAGCGAGAGTCCGCTGCGA
GCGGCTGATCTGAATGGCGATGGCATCAAGGACGTGGTCTTTGGCTATGG
AGTGGACGACAACATACCCTACGAGGGCATACCCTTGCCGCGCTGCCAGT
GCGCCCAGCAAGGGGAGGAGGTGCCCTGCGAGGGCGGCGTGGTGGCCTTG
AACGGACTGGACGGATCCATTCTCTGGCAATCGTGGAGCGTGGCGAATGT
CTTCTCGCTGCACTGCAGCGCGGATGTGGACGGAGATGGGGGCACCGATT
GCGTGGCAGCTGGTAGATTGGGAATGATTTACGCCATCAATGGACGCACT
GGCTCCGTAATCTGGAGCTTCCGGGAACTGGAAGTGGAAACAAACTCGCC
CATTGTAATGGATCTGTACACGATTAATGTGCTGCGCGATCTGGATGGTG
ATTCGGTGCCGGAAGTTATAGCCGCCCATCTGGAGGAGCGCGAGGAGTCC
AAGGCGGGACACATAAAGCTGATTTCGGGCAAGACGGGCAAGGTAATCCG
GAGCATTCCAACGCCGTACCGCGAGGAGATGTTCGTGCCCATTCAGCTGA
TCACGCAGGCGGATGGCACGGAGCTCCTACTGATTGTCACCGGCGGGCAG
AACACTCCAGGTGGCATTTACTCCTTGCGACTGCACTCCCTAATGGCGCA
CACCAGTGAGAAGCACTTCACCCCGCTCCATCGTCAACAGGGCTCGGGTC
TGATGGTGCCCGCCGTGCTAACCGATCTAAATGGCGATGGTATCTCGGAT
GTTGTGGTGGCCGCCTTTAATCGGAGCGTTCTAGCCTTCGATGGAGCCAA
CTACACCATGATGTGGAACTACACGTTCCCGGCCAGCGAGTGCGTCAGTG
CCATTGTCCCGGGTCTATTTAATCACGACAGGGTCACGGATTTCATGGTG
AAGTACAACACTGGACCGGGATTCCCGGTATACTACTACTCGCAAACCAC
CATCCTGGACGGACGAAACGGACAGCCCCTGCTGAACGCCATGATGACGG
ATGCAGGTGGTGCCAATAGTCTTCTCGGCGGCGTCTCCATTTCGCAGAGC
TTCGGAGGCGACTTCTTCTTGCACTGGCAGCTGCAGTGCCGCAACCGTCC
GGATGCCCGGGATGCCTACGAATTTGTGCCGGATAGCGACATTATACTCC
AAGCCAGGGCGGACACCTGTCGTCTGCGTTACAACGAGTCCACGATGCTG
AAGCTCTACGGGATTGCCAGGCACATCGAACCACCGGGTGCGGTCCTCTT
TAGCACCGATGACTTGGAGGTGCAGCTGAATCGCACACAACGACCGGCGG
CAGCAGGAAAGAAATCCCCACTGAAGCATCCCAAGCTGCTCAAAAAACTG
CTGGCCGGAAACAGGGAGCAACTGCTGCGCCAGGTGGCCGCCGGATCGGA
AATTGGCAATGAAAATGGTATAGGTAGTGGGACGGAGCACCCCAACCGTC
GCCTCAAGACACACCATCGACCCAATCCGCTGATGGAGCAGCAATTGCAG
GAACTTTTGCCTCAGGGAGCAGATAACGAATCACCTAACTTCGGAATGGC
AAGTGGTTACCCCAAGGAATTTAAGGACTACGATGCCCTACAACTGCCGC
CAGAGAATGCTAATCCGCTGCGCCTGCCGGAGGAGTACGAACTGGTGTAC
AACGACGAAGTGCCTCCGCTTTTAGAGCCCAGTGAACGTGAGCGACCCAT
TCACCTGCGCTCCAAATATCCCAGCGCCGGCAATCGGGATGTGCGCAGTG
GATTCCTCGAAGCCAGTGGCAGCAGCATCATAACCACCAGCCCTGCCACC
CCCAGCTCCACCGGACAACCCATGTCAGCTCAGTCCCCGCTGAGCCTGTG
GGATCTGGAGCTGGACAACGAGGCGCGGGAGCGAGCTGCGGACGCCCAGG
AGGAAAACAAAAAACAGAAGAAACGTCGCAAAAGACGCGAGAGTGCTTCC
GGAATCACGACAACAGCGTCCGAGGATTCCGCTGGTGTTGAGGAGTCCTC
CGTAGGAGCTGACTGGTACTTGGCTTCCATCTCATCCACCGGCGTTTTGC
TGAAAGCTCTGGGCAATGTCAGCTCCTCGCTGGACTTTGCCTTCGTCCTC
AACATCCGAGAATCGGAGGCCTATCCGCCACTCTTCTCTCCGCAGGATCT
CAGCTGCGTCGAGGAGAAAGTCAGTGCGTACAAGAGCTACACCATAGACA
ACTTACGCGTGCTGCGCAAACAGTTCCTGAAGCAGTGCCTCAGCGAGCGT
CTGGTGGACGCGGAGCCCACCCTACCCAAGTTCGAGTCGCAGCTGGTGGT
GACCCGCATCGGGATCACCTGCACCTGTCGCTCCCTGCGGCCGGGCGAGG
TTTGCTCGGAGCTGGATCCGGTGGAGTCGCAGCGCTGGACGGAGTTTATG
GGTAACTCGGGACATGGCTTCTATGCCAACCACTAAAAGCTTTCTAGACC
AT
BS32544.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:34:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6184-RF | 3090 | CG6184-PF | 121..3090 | 17..2986 | 14850 | 100 | Plus |
| CG6184-RA | 2970 | CG6184-PA | 1..2970 | 17..2986 | 14850 | 100 | Plus |
| CG6184-RE | 2922 | CG6184-PE | 74..2922 | 138..2986 | 14245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:34:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6184-RF | 3548 | CG6184-RF | 331..3301 | 17..2987 | 14855 | 100 | Plus |
| CG6184-RA | 3356 | CG6184-RA | 139..3109 | 17..2987 | 14855 | 100 | Plus |
| CG6184-RE | 3380 | CG6184-RE | 284..3133 | 138..2987 | 14250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:34:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19653625..19654923 | 2122..824 | 6495 | 100 | Minus |
| 3R | 32079331 | 3R | 19654989..19655674 | 823..138 | 3430 | 100 | Minus |
| 3R | 32079331 | 3R | 19652950..19653563 | 2736..2123 | 3070 | 100 | Minus |
| 3R | 32079331 | 3R | 19652616..19652867 | 2987..2736 | 1260 | 100 | Minus |
| 3R | 32079331 | 3R | 19656205..19656327 | 139..17 | 615 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:34:26 has no hits.
BS32544.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-11-09 12:26:43 Download gff for
BS32544.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6184-RA | 162..3129 | 17..2984 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:17:22 Download gff for
BS32544.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6184-RA | 139..3106 | 17..2984 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:17:22 Download gff for
BS32544.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19652619..19652867 | 2736..2984 | 100 | <- | Minus |
| 3R | 19652951..19653563 | 2123..2735 | 100 | <- | Minus |
| 3R | 19653625..19654923 | 824..2122 | 100 | <- | Minus |
| 3R | 19654989..19655672 | 140..823 | 100 | <- | Minus |
| 3R | 19656205..19656327 | 17..139 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-11-09 12:26:43 Download gff for
BS32544.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15478341..15478589 | 2736..2984 | 100 | <- | Minus |
| arm_3R | 15478673..15479285 | 2123..2735 | 100 | <- | Minus |
| arm_3R | 15479347..15480645 | 824..2122 | 100 | <- | Minus |
| arm_3R | 15480711..15481394 | 140..823 | 100 | <- | Minus |
| arm_3R | 15481927..15482049 | 17..139 | 100 | | Minus |
BS32544.pep Sequence
Translation from 16 to 2985
> BS32544.pep
MIKLRPYVPSKRIAIRDSSIDEDASDDVEDEVFIKDARSAKRSEEQGLKR
PLMAPRRKHSPGSGPGSGSGSTPIMKQHRRRRCCRCCEPFCYALAALTVL
CALLSLAALMLTLFPLPLQRIRHWWRPDPAQLAAISAGSSRISYGSSLGS
EFVPCTQISVQKRWSRSLARMNSESPLRAADLNGDGIKDVVFGYGVDDNI
PYEGIPLPRCQCAQQGEEVPCEGGVVALNGLDGSILWQSWSVANVFSLHC
SADVDGDGGTDCVAAGRLGMIYAINGRTGSVIWSFRELEVETNSPIVMDL
YTINVLRDLDGDSVPEVIAAHLEEREESKAGHIKLISGKTGKVIRSIPTP
YREEMFVPIQLITQADGTELLLIVTGGQNTPGGIYSLRLHSLMAHTSEKH
FTPLHRQQGSGLMVPAVLTDLNGDGISDVVVAAFNRSVLAFDGANYTMMW
NYTFPASECVSAIVPGLFNHDRVTDFMVKYNTGPGFPVYYYSQTTILDGR
NGQPLLNAMMTDAGGANSLLGGVSISQSFGGDFFLHWQLQCRNRPDARDA
YEFVPDSDIILQARADTCRLRYNESTMLKLYGIARHIEPPGAVLFSTDDL
EVQLNRTQRPAAAGKKSPLKHPKLLKKLLAGNREQLLRQVAAGSEIGNEN
GIGSGTEHPNRRLKTHHRPNPLMEQQLQELLPQGADNESPNFGMASGYPK
EFKDYDALQLPPENANPLRLPEEYELVYNDEVPPLLEPSERERPIHLRSK
YPSAGNRDVRSGFLEASGSSIITTSPATPSSTGQPMSAQSPLSLWDLELD
NEARERAADAQEENKKQKKRRKRRESASGITTTASEDSAGVEESSVGADW
YLASISSTGVLLKALGNVSSSLDFAFVLNIRESEAYPPLFSPQDLSCVEE
KVSAYKSYTIDNLRVLRKQFLKQCLSERLVDAEPTLPKFESQLVVTRIGI
TCTCRSLRPGEVCSELDPVESQRWTEFMGNSGHGFYANH*
BS32544.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:44:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6184-PF | 1029 | CG6184-PF | 41..1029 | 1..989 | 5163 | 100 | Plus |
| CG6184-PA | 989 | CG6184-PA | 1..989 | 1..989 | 5163 | 100 | Plus |
| CG6184-PE | 973 | CG6184-PE | 25..973 | 41..989 | 4963 | 99.9 | Plus |
