BS32545.complete Sequence
947 bp assembled on 2013-09-16
GenBank Submission: KX805756
> BS32545.complete
GAAGTTATCAGTCGACATGCGCTCCCTTTGGCTGCTGCTCGGCTTGGGCC
TGCTGGCTGTGAGCCACGTCCAGGCCTCTACGGAGTTTTCCGAAGATCTG
CTGGATGAGGACCTCGACCTGTCCGACATCGATGAGAACGAAGAGGAGTT
CCTGCGCCTGCTGGAGGAGAAGAACAAGATCAAGGATATTGAGCGCGAGA
ATGAGATTGCCACCAAGCTGGCCGAAGTGCAGCACAATCTACTCAATCCC
GTTGTCGAGGTGGATCTGTGCGAAACGATGAGCTGCGGAGCCGGTCGCAT
CTGCCAGATGCACGACGAGAAGCCCAAATGCGTGTGCATTCCGGAGTGCC
CGGAGGAGGTGGACACTCGCCGCCTGGTCTGCACTAATACCAACGAGACC
TGGCCGTCGGACTGCTCTGTGTATCAGCAGCGCTGCTGGTGCGACAGCGG
CGAGCCCGGCTGCACCAATCCGGACAACGCGCACATGCACATCGACTACT
ACGGCGCTTGCCACGAGCCCAGGAGCTGCGAGGGCGAGGACCTGAAGGAC
TTCCCCAGGCGCATGCGCGACTGGCTGTTCAACGTGATGCGCGACCTGGC
CGAGCGCGACGAGCTGACCGAGCACTACATGCAGATGGAGCTGGAGGCGG
AGACCAACAACTCGCGTCGCTGGTCGAACGCCGCCGTGTGGAAGTGGTGC
GACCTGGACGGCGATACCGATCGCTCCGTCTCGCGCCACGAGCTCTTCCC
CATCCGTGCTCCGCTGGTCAGTCTCGAGCACTGCATCGCACCCTTCCTCG
AGTCCTGCGACTCCAACAAGGACCATCGCATCACCCTGGTGGAGTGGGGC
GCCTGCCTGGAGCTGGATCCCGAGGACCTCAAGGAGCGTTGCGACGACGT
CCAGCGGGCTCAGCCCCATCTTCTGGGTTAGAAGCTTTCTAGACCAT
BS32545.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:57:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| BM-40-SPARC-RB | 915 | CG6378-PB | 1..915 | 17..931 | 4560 | 99.9 | Plus |
| BM-40-SPARC-RA | 915 | CG6378-PA | 1..915 | 17..931 | 4560 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:57:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| BM-40-SPARC-RB | 1131 | CG6378-RB | 72..991 | 12..931 | 4570 | 99.8 | Plus |
| BM-40-SPARC-RA | 1143 | CG6378-RA | 84..1003 | 12..931 | 4570 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:57:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26869378..26870132 | 931..177 | 3760 | 99.9 | Minus |
| 3R | 32079331 | 3R | 26870193..26870359 | 178..12 | 820 | 99.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:57:53 has no hits.
BS32545.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 12:02:52 Download gff for
BS32545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BM-40-SPARC-RA | 89..1003 | 17..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:38:28 Download gff for
BS32545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BM-40-SPARC-RA | 89..1003 | 17..931 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:38:28 Download gff for
BS32545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26869378..26870130 | 179..931 | 99 | <- | Minus |
| 3R | 26870193..26870354 | 17..178 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 12:02:52 Download gff for
BS32545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22695100..22695852 | 179..931 | 99 | <- | Minus |
| arm_3R | 22695915..22696076 | 17..178 | 100 | | Minus |
BS32545.pep Sequence
Translation from 16 to 930
> BS32545.pep
MRSLWLLLGLGLLAVSHVQASTEFSEDLLDEDLDLSDIDENEEEFLRLLE
EKNKIKDIERENEIATKLAEVQHNLLNPVVEVDLCETMSCGAGRICQMHD
EKPKCVCIPECPEEVDTRRLVCTNTNETWPSDCSVYQQRCWCDSGEPGCT
NPDNAHMHIDYYGACHEPRSCEGEDLKDFPRRMRDWLFNVMRDLAERDEL
TEHYMQMELEAETNNSRRWSNAAVWKWCDLDGDTDRSVSRHELFPIRAPL
VSLEHCIAPFLESCDSNKDHRITLVEWGACLELDPEDLKERCDDVQRAQP
HLLG*
BS32545.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:44:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| BM-40-SPARC-PB | 304 | CG6378-PB | 1..304 | 1..304 | 1676 | 100 | Plus |
| BM-40-SPARC-PA | 304 | CG6378-PA | 1..304 | 1..304 | 1676 | 100 | Plus |
