Clone BS32563 Report

Search the DGRC for BS32563

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:325
Well:63
Vector:pDNR-Dual
Associated Gene/TranscriptDNApol-alpha60-RA
Protein status:BS32563.pep: full length peptide match
Sequenced Size:1634

Clone Sequence Records

BS32563.complete Sequence

1634 bp assembled on 2013-09-16

GenBank Submission: KX805082

> BS32563.complete
GAAGTTATCAGTCGACATGGAGTTTGGTCTGAAGAAACGCGCGAGACATG
AGGTGAAGGTGGAGGTGGCCAGCCTGGAAACCAAGTACCCGCACAACGTC
ATGCTGTACCACTATCCGCCGACGGAGGACGTGCACATAGACGAATTCGA
GGAGCTGGCTCTAGAGCGCTTGCGCCTTCTCCGCGTCCTGGATCGCGCAA
GCACCCGGAACCTGCGCGTGCTCTCAGATGAATGGAAGGAAATCGTGAGT
GCGGACCTGACCCGCGAGGGATTGCGCAGCTATTTAAGGCTCTGCTCCAC
CGGCGGAAGCGCCAAGCACGAGGCGGATATCCAGACCCGCAGGCGGGACT
ATCTTTCGCACTTCATCTTGCGGCTGGCCTACTGCCGCTCCGAGGACCTT
GCGCGCTGGTTCGTGGCCCGCGAAATGGAGCTCTTCCGGTACAAATTCGC
TGCACTTAGCAGCTTCGAGGTGAAGCAGTTCCTTGAGGCCAACGGCTTTG
AGATTCACCCCCTCACCGAGGCCCAGAAGGACGAAGTCAAGGACGGCCTG
TACGAGAGCACGGTCGGACAGAGCGTGGCGAAGATCGAGCTGTTGGACTT
CTACAAGGTGCCCTTCACCCAGGTGCTCGATCTGGTGCGCGGACGTCGCT
GCTTTTTAAAGGCTGGCTACGCCTATGTTAACACCCACGACCTGGTGTCC
CTAGTGGGCACCAAGCAGCAGGACGAGATCGAGCAAGGCCTGCAGGCTGC
TAAGACTATGGTGGAGGATGTAGAAGCCGACGAGCGCATCTCCCGCACAC
TTAAAGCTCTACATAACTCGTATACCGGTAGGGATTACACCGTTTGTCGG
GATGCAGCGGTGCCCATCGAGTCGCTCGATCAGCTCTCCAAGACCTCCAT
GCCGTTGTGTATGCGCATGTGCCACGAGCACATTCGTGCCAACCATCACA
TAAAACATAGCGGCCGAATGCAATACGGCCTGTTTCTCAAAGGAATTGGC
GTGGCACTGGAGGATTCGCTGCGCTTCTGGCGCGAAGAGTTTACCAAGAA
AATGGACGCGGATAAGTTTACACGCAGCTACGAGTACAATATTTACCATA
ACTACGGAAAGAAGGGTTCCATGGTCAACTACACACCCTACTCGTGCGCC
AAGATTATCAAGGATGTGGCGGGGCCGGGCGATTGCCACGGCTGTCCGTA
TAAGAACATGGATCAGGGCTCGTTGAAAACCAAGCTGTCCTCCTATGGCC
TGTCAGCCAGTGCCATCGACGAGGTGATGTTCTTTGTGTCCCGCGGTCAC
TATCAAATTGGATGCGGCAAGTACTTCCAACTTACCCACAATTCACCCGT
CGAGCCGAGCATCAATCACCCCAACAACTACTTCGAGGAGAGCCAGATAG
CGATGGGCAACCGGCAGAAGCGCGCCAATGGTTCTGCTCCGCCCAAGGCC
AGAATCCGTCCAGATATCAAGGGCCATGGGGATCGGTCCATGCTGATGGG
TGACGATGACGATGAGTTGTGGCGAATCGCGGAAACCCAGGAGCGTATCA
TGCAGAGCCAAAAGGACATATCCGAGGCCTTCAATGATGATCTAGATCTT
ACGCAAATCGATTACTAAAAGCTTTCTAGACCAT

BS32563.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:59:14
Subject Length Description Subject Range Query Range Score Percent Strand
DNApol-alpha60-RA 1602 CG5553-PA 1..1602 17..1618 7995 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:59:15
Subject Length Description Subject Range Query Range Score Percent Strand
DNApol-alpha60-RA 1753 CG5553-RA 79..1681 17..1619 8000 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:59:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20359905..20361507 1619..17 8000 99.9 Minus
Blast to na_te.dros performed on 2014-11-28 13:59:12 has no hits.

BS32563.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 12:03:21 Download gff for BS32563.complete
Subject Subject Range Query Range Percent Splice Strand
DNApol-alpha60-RA 79..1678 17..1616 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:38:58 Download gff for BS32563.complete
Subject Subject Range Query Range Percent Splice Strand
DNApol-alpha60-RA 79..1678 17..1616 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:38:58 Download gff for BS32563.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20359908..20361507 17..1616 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 12:03:21 Download gff for BS32563.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20353008..20354607 17..1616 99   Minus

BS32563.pep Sequence

Translation from 16 to 1617

> BS32563.pep
MEFGLKKRARHEVKVEVASLETKYPHNVMLYHYPPTEDVHIDEFEELALE
RLRLLRVLDRASTRNLRVLSDEWKEIVSADLTREGLRSYLRLCSTGGSAK
HEADIQTRRRDYLSHFILRLAYCRSEDLARWFVAREMELFRYKFAALSSF
EVKQFLEANGFEIHPLTEAQKDEVKDGLYESTVGQSVAKIELLDFYKVPF
TQVLDLVRGRRCFLKAGYAYVNTHDLVSLVGTKQQDEIEQGLQAAKTMVE
DVEADERISRTLKALHNSYTGRDYTVCRDAAVPIESLDQLSKTSMPLCMR
MCHEHIRANHHIKHSGRMQYGLFLKGIGVALEDSLRFWREEFTKKMDADK
FTRSYEYNIYHNYGKKGSMVNYTPYSCAKIIKDVAGPGDCHGCPYKNMDQ
GSLKTKLSSYGLSASAIDEVMFFVSRGHYQIGCGKYFQLTHNSPVEPSIN
HPNNYFEESQIAMGNRQKRANGSAPPKARIRPDIKGHGDRSMLMGDDDDE
LWRIAETQERIMQSQKDISEAFNDDLDLTQIDY*

BS32563.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:44:56
Subject Length Description Subject Range Query Range Score Percent Strand
DNApol-alpha60-PA 533 CG5553-PA 1..533 1..533 2803 100 Plus