Clone BS32572 Report

Search the DGRC for BS32572

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:325
Well:72
Vector:pDNR-Dual
Associated Gene/TranscriptGNBP-like3-RA
Protein status:BS32572.pep: gold
Sequenced Size:491

Clone Sequence Records

BS32572.complete Sequence

491 bp assembled on 2013-09-16

GenBank Submission: KX803505

> BS32572.complete
GAAGTTATCAGTCGACATGGCGCAAAACTCAAAGTTAACAATCTATCTGT
TCCTAGTCGCAATTTCCGTGGGCTCCAGCCTGTCCTACGATGTGCCCAAG
GCCACCGTCAAGGTCAACTCACCGAAGGGATTCGAAGTCTCCATTCCGGA
TGAGCCAGGCATTTCCCTATTCGCTTTTCACGGCAAGGTCAACGAGGAAA
TGGACGATCTGAGCGATCAGACCTGGGCCGCCGATGTGGTCAGTTCACGC
AATGGACGCTGGACTTATCGCAACCGGAACCATCAGCTTAGACCCGGAGA
TGTTCTGTACTATTGGACAACGGCGCGTTACCATGGAGTCGACTATCACA
ACTACAACCAGAGGTATGTGGTTGGGCAGGGGGATTCCCAGAGAATCGAT
GTCAACGGCTCCAACGGCGGTCGCCAGCCGATTGTGGCCAACGGCCATAA
TACGTTCAATATATATGTACAATAAAAGCTTTCTAGACCAT

BS32572.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:58:57
Subject Length Description Subject Range Query Range Score Percent Strand
GNBP-like3-RA 459 CG13422-PA 1..459 17..475 2295 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:58:59
Subject Length Description Subject Range Query Range Score Percent Strand
GNBP-like3-RA 515 CG13422-RA 18..482 12..476 2310 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:58:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20526328..20526792 12..476 2310 99.8 Plus
Blast to na_te.dros performed on 2014-11-28 13:58:56 has no hits.

BS32572.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 12:03:15 Download gff for BS32572.complete
Subject Subject Range Query Range Percent Splice Strand
CG13422-RA 39..495 17..473 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:38:53 Download gff for BS32572.complete
Subject Subject Range Query Range Percent Splice Strand
GNBP-like3-RA 23..479 17..473 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:38:53 Download gff for BS32572.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20526333..20526789 17..473 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 12:03:15 Download gff for BS32572.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16413838..16414294 17..473 100   Plus

BS32572.pep Sequence

Translation from 16 to 474

> BS32572.pep
MAQNSKLTIYLFLVAISVGSSLSYDVPKATVKVNSPKGFEVSIPDEPGIS
LFAFHGKVNEEMDDLSDQTWAADVVSSRNGRWTYRNRNHQLRPGDVLYYW
TTARYHGVDYHNYNQRYVVGQGDSQRIDVNGSNGGRQPIVANGHNTFNIY
VQ*

BS32572.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:44:52
Subject Length Description Subject Range Query Range Score Percent Strand
GNBP-like3-PA 152 CG13422-PA 1..152 1..152 814 100 Plus
GNBP3-PA 490 CG5008-PA 26..121 24..119 317 59.4 Plus
CG12780-PA 100 CG12780-PA 4..96 24..115 316 61.3 Plus
CG30148-PB 124 CG30148-PB 4..121 7..124 284 44.1 Plus
CG30148-PA 124 CG30148-PA 4..121 7..124 284 44.1 Plus