BS32578.complete Sequence
572 bp assembled on 2013-09-16
GenBank Submission: KX803699
> BS32578.complete
GAAGTTATCAGTCGACATGTCGGAGCAACCGTCCATCTGTCACAAGTGCA
ATGAGGTCATCCAACTGCGCATCATTACCGCTCTGGGCAAGACCTGGCAT
CCGGAGCACTTCGTCTGCAAGGACTGCCAATGTCCCATCACCGAGGCCTC
CTTCAACATCAATGATGGTCAGCCCGTCTGCTCCGCCTGCTTCGTGTCGA
ACTACTCGGGCATCTGTCACGGCTGCAAACGTCCCATTCTGGAGCGCACC
ATCAAGGCCATGGGTGAGACGTGGCATGAGGAATGTTTCTTGTGCCGCGG
ACCCTGCATGCAGCAATTGGCGGGCTCCTCCTTCTACGAGCACGATGGGC
TTCCCTACTGCCGGACAGACTTCGAGCATATGTTCGCCGCCCGCTGCGGC
AATTGCAAAGCTCCCATTACGGAGAACGCGATCGTGGCCCTCGACGCCAA
GTGGCATCGGGAGTGCTTCAAGTGCAAGAAATGCAAAACACCCATCACGG
CCAGTTCCTTTGTCGTGGAGGATAACCAACCGTTGTGCAAGGCCTGCTCC
GATTAAAAGCTTTCTAGACCAT
BS32578.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:00:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34325-RB | 540 | CG34325-PB | 1..540 | 17..556 | 2700 | 100 | Plus |
| CG34325-RA | 540 | CG34325-PA | 1..540 | 17..556 | 2700 | 100 | Plus |
| CG34325-RC | 315 | CG34325-PC | 3..315 | 244..556 | 1565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:00:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34325-RB | 1252 | CG34325-RB | 273..813 | 17..557 | 2705 | 100 | Plus |
| CG34325-RA | 1245 | CG34325-RA | 266..806 | 17..557 | 2705 | 100 | Plus |
| CG34325-RC | 1020 | CG34325-RC | 268..581 | 244..557 | 1570 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:00:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16715056..16715291 | 478..243 | 1180 | 100 | Minus |
| X | 23542271 | X | 16716438..16716663 | 244..19 | 1130 | 100 | Minus |
| X | 23542271 | X | 16714888..16714968 | 557..477 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:00:06 has no hits.
BS32578.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 12:03:40 Download gff for
BS32578.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34325-RA | 266..803 | 17..554 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:39:15 Download gff for
BS32578.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34325-RA | 266..803 | 17..554 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:39:15 Download gff for
BS32578.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16714891..16714966 | 479..554 | 100 | <- | Minus |
| X | 16715056..16715289 | 245..478 | 100 | <- | Minus |
| X | 16716438..16716664 | 17..244 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 12:03:40 Download gff for
BS32578.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16608924..16608999 | 479..554 | 100 | <- | Minus |
| arm_X | 16609089..16609322 | 245..478 | 100 | <- | Minus |
| arm_X | 16610471..16610697 | 17..244 | 99 | | Minus |
BS32578.pep Sequence
Translation from 16 to 555
> BS32578.pep
MSEQPSICHKCNEVIQLRIITALGKTWHPEHFVCKDCQCPITEASFNIND
GQPVCSACFVSNYSGICHGCKRPILERTIKAMGETWHEECFLCRGPCMQQ
LAGSSFYEHDGLPYCRTDFEHMFAARCGNCKAPITENAIVALDAKWHREC
FKCKKCKTPITASSFVVEDNQPLCKACSD*
BS32578.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:45:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34325-PB | 179 | CG34325-PB | 1..179 | 1..179 | 1024 | 100 | Plus |
| CG34325-PA | 179 | CG34325-PA | 1..179 | 1..179 | 1024 | 100 | Plus |
| CG31988-PB | 178 | CG31988-PB | 6..177 | 7..178 | 629 | 55.8 | Plus |
| CG31988-PA | 178 | CG31988-PA | 6..177 | 7..178 | 629 | 55.8 | Plus |
| CG31624-PC | 178 | CG31624-PC | 6..177 | 7..178 | 623 | 55.8 | Plus |
