BS32580.complete Sequence
1103 bp assembled on 2013-09-16
GenBank Submission: KX804995
> BS32580.complete
GAAGTTATCAGTCGACATGTTCTCCAGCTTCTTTGAAACTGCCCGGAACT
CGCCATTCCGCACCCCCATGTCGATGGCAAGATGCGATGCCGCCGCCCCA
GTGGTGGAACCCCAGCCGGTTGAGGGTCGCCAGATCGCCGCCGCCGCTAC
CCCGGTGGCCAACCAGCAGGATTCGTGCGAATTCGGCAGCACCAAGTACT
TCGCTCTGTGCGGAATTGGTGGCATTCTCAGCTGCGGCACCACCCACACC
TTCGTGGTCCCACTGGATCTGGTGAAGTGCCGTCTGCAGGTCGACCAGGC
CAAGTACAAGAATCTGGTGCACGGATTCAAGGTCACCGTGGCGGAGGAGG
GCGCCCGCGGACTGGCTAAGGGCTGGTTCCCCACTCTGCTCGGCTACTCG
GCACAGGGTCTGTGCAAGTTCGGTCTGTACGAGTTGTTCAAGGTGAAGTA
CGCCGAAATCATTGGCGAGGAGAACGCCTACCTGTACCGCACCTCCTTGT
ATCTGGCTGCTTCCGCTTCGGCCGAGTTCTTCGCCGATATCGCTCTGGCG
CCGTTCGAGGCCGCCAAGGTGAAGATCCAGACTATTCCCGGATACGCCAA
CAACTTCCGCGAGGCAGTGCCCAAGATGCTAAAGGAGGAGGGCGTCAATG
CCTTCTACAAGGGTCTGGTTCCCCTGTGGATGCGACAGATCCCATACACC
ATGATGAAGTTCGCTTGCTTCGAGCGCACCGTGGAGCTGCTCTACAAGTA
TGTGGTGCCCAAGCCTCGTGCCGACTGCACCAAGGGCGAGCAGCTGATCG
TGACCTTCGCCGCTGGCTACATCGCCGGTGTGTTCTGTGCCGTGGTGTCG
CATCCCGCTGATGTGGTGGTGTCCAAGCTGAACCAGGCCAAGGGAGCTAG
CGCCATCAGCGTGGCCAAGTCGCTGGGCTTCAGTGGCATGTGGAACGGAT
TGACTCCTCGTATTATCATGATCGGTACCCTGACCGCTCTGCAGTGGTTC
ATCTACGATGGTGTGAAGGTCGCCCTGGGCATTCCCCGCCCACCACCACC
AGAGATGCCAGCTAGCCTGAAGGCCAAGCAGCATTAAAAGCTTTCTAGAC
CAT
BS32580.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:00:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mpcp-RC | 1071 | CG4994-PC | 1..1071 | 17..1087 | 5355 | 100 | Plus |
| Mpcp-RB | 1071 | CG4994-PB | 1..1071 | 17..1087 | 5355 | 100 | Plus |
| Mpcp-RA | 1071 | CG4994-PA | 1..1071 | 17..1087 | 5355 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:00:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mpcp-RC | 1771 | CG4994-RC | 152..1222 | 17..1087 | 5355 | 100 | Plus |
| Mpcp-RB | 1757 | CG4994-RB | 138..1208 | 17..1087 | 5355 | 100 | Plus |
| Mpcp-RA | 1700 | CG4994-RA | 81..1151 | 17..1087 | 5355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:00:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14538032..14538422 | 17..407 | 1955 | 100 | Plus |
| 3L | 28110227 | 3L | 14538726..14539072 | 404..750 | 1735 | 100 | Plus |
| 3L | 28110227 | 3L | 14539553..14539892 | 748..1087 | 1700 | 100 | Plus |
| 2R | 25286936 | 2R | 20279409..20280160 | 927..176 | 1465 | 79.7 | Minus |
| 2R | 25286936 | 2R | 20279211..20279302 | 1059..968 | 205 | 81.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:00:11 has no hits.
BS32580.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 12:03:42 Download gff for
BS32580.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mpcp-RA | 86..1149 | 22..1085 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:39:17 Download gff for
BS32580.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mpcp-RA | 86..1149 | 22..1085 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:39:17 Download gff for
BS32580.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14538037..14538421 | 22..406 | 100 | -> | Plus |
| 3L | 14538729..14539069 | 407..747 | 100 | -> | Plus |
| 3L | 14539553..14539890 | 748..1085 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 12:03:42 Download gff for
BS32580.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14531137..14531521 | 22..406 | 100 | -> | Plus |
| arm_3L | 14531829..14532169 | 407..747 | 100 | -> | Plus |
| arm_3L | 14532653..14532990 | 748..1085 | 100 | | Plus |
BS32580.pep Sequence
Translation from 16 to 1086
> BS32580.pep
MFSSFFETARNSPFRTPMSMARCDAAAPVVEPQPVEGRQIAAAATPVANQ
QDSCEFGSTKYFALCGIGGILSCGTTHTFVVPLDLVKCRLQVDQAKYKNL
VHGFKVTVAEEGARGLAKGWFPTLLGYSAQGLCKFGLYELFKVKYAEIIG
EENAYLYRTSLYLAASASAEFFADIALAPFEAAKVKIQTIPGYANNFREA
VPKMLKEEGVNAFYKGLVPLWMRQIPYTMMKFACFERTVELLYKYVVPKP
RADCTKGEQLIVTFAAGYIAGVFCAVVSHPADVVVSKLNQAKGASAISVA
KSLGFSGMWNGLTPRIIMIGTLTALQWFIYDGVKVALGIPRPPPPEMPAS
LKAKQH*
BS32580.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:45:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mpcp-PC | 356 | CG4994-PC | 1..356 | 1..356 | 1856 | 100 | Plus |
| Mpcp-PB | 356 | CG4994-PB | 1..356 | 1..356 | 1856 | 100 | Plus |
| Mpcp-PA | 356 | CG4994-PA | 1..356 | 1..356 | 1856 | 100 | Plus |
| CG9090-PC | 374 | CG9090-PC | 1..367 | 1..354 | 1379 | 71.1 | Plus |
| CG9090-PB | 374 | CG9090-PB | 1..367 | 1..354 | 1379 | 71.1 | Plus |
