BS32588.complete Sequence
1310 bp assembled on 2013-09-16
GenBank Submission: KX804419
> BS32588.complete
GAAGTTATCAGTCGACATGTCGCCAAACAACAGCGCGGAAAAGCCAGTCA
ATCCCAACGAGCACCTGCACATACCGAAGTGGATAAATGAGGAATACTTC
CAGCCGATCATCGAGAAGGATGTGGAAAACTTTGACAAGATCATAAACCT
TGTGCCCATTGCGGCCACTGCGCCCGGCGAGAACTACACATCCATTATGA
TCCGCGTCATTGTGGATATACTGCTGAAGGATGGCAGCGAGCAGAGGGTA
TCGTACATTTTGAAGACAATGCTGGAGGCGGACAGTGGAGCGGATGTGAT
CGATGGCATGGGACTTTTTCCCAAGGAGCGAAAAATGTACGAGGTGCACA
TCCCGCAGTTCGTAAAGCTTTACAAGGAGGCTGGCCTGGAAATCGAATTG
GCGCCCAAGTGCCTCCATGTCGACGCCACTGACGAATTGATTACCATGGT
TTTCGAGGATCTGAGCCGGCAGAATTTCAAGAACTTCGATCGGCTAAAAG
GGTTCGATCTGCCGCACATGCGAGAAGTGCTCCGGAAACTGGCCGAACTG
CATGCTGCATCCGTGGTGGCCAAGGAAATAAATGGTCCCTACGATGCCAT
GTACAACATGTCCATCTACAACGAGCAGAGTCGGGACCTCTTTGAGTCTC
TGGGTAAGCAGCGAGAGGAGCAATTCCTCAAGGCCATGCGCAACTGGGAC
CTCGAGAATGCCGAAAGCTACATCGCCCGGATGTGGGACCCCTTGGAGGT
GTTCGAGGAAGCAGTGCAAGTCAACCAGGTGGACGAGGACGAGTTCAATG
TGCTGAACCACGGCGACTGTTGGTCCAACAACATCATGTTCAACTACAAG
GATAACGGCGAGATCGATAGAACCATATTGGTGGACCTGCAGGTTGGCAA
GTGGGGCAGCCCGGCTCAAGACCTTTGGTACCTGATCACAACATCGGCAT
CGCTGGATATCAAGATCAAGGAATTCGATCACTTTATTCAGATCTATCAC
CAGCGTCTGGCGGAATGCCTCAAGCTACTGAACTACTCGAAGCCCATTCC
CACACTCAGGGACCTGCACATTATGATGCTGAAGTATGGATTCTGGGGAC
CTCTGACCGCCATGGGTGTGATGGTGGCCACACTTATGCCCACGGACAAG
GACGCCAATATGAAAATGATTCTGGCCCAAGGACCCGAGGCCGATGCCAT
ACGATACAGGACCTTCATCAATCCCTACTATGCCAAAGCAATGAAGGTGC
TTTTACCGTTCTTCGATAACAAGGGACTTTTGAAGTCGAATTAGAAGCTT
TCTAGACCAT
BS32588.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:00:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10550-RD | 1278 | CG10550-PD | 1..1278 | 17..1294 | 6390 | 100 | Plus |
| CG10550-RC | 1278 | CG10550-PC | 1..1278 | 17..1294 | 6390 | 100 | Plus |
| CG10550-RB | 1278 | CG10550-PB | 1..1278 | 17..1294 | 6390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:00:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10550-RD | 1460 | CG10550-RD | 85..1362 | 17..1294 | 6390 | 100 | Plus |
| CG10550-RC | 1594 | CG10550-RC | 219..1496 | 17..1294 | 6390 | 100 | Plus |
| CG10550-RB | 1464 | CG10550-RB | 89..1366 | 17..1294 | 6390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:00:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25306761..25307629 | 1098..230 | 4345 | 100 | Minus |
| 3R | 32079331 | 3R | 25307689..25307902 | 230..17 | 1070 | 100 | Minus |
| 3R | 32079331 | 3R | 25306505..25306702 | 1294..1097 | 990 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:00:31 has no hits.
BS32588.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 12:03:51 Download gff for
BS32588.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10550-RB | 89..1366 | 17..1294 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:39:24 Download gff for
BS32588.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10550-RB | 89..1366 | 17..1294 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:39:24 Download gff for
BS32588.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25306505..25306701 | 1098..1294 | 100 | <- | Minus |
| 3R | 25306762..25307628 | 231..1097 | 100 | <- | Minus |
| 3R | 25307689..25307902 | 17..230 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 12:03:51 Download gff for
BS32588.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21132227..21132423 | 1098..1294 | 100 | <- | Minus |
| arm_3R | 21132484..21133350 | 231..1097 | 100 | <- | Minus |
| arm_3R | 21133411..21133624 | 17..230 | 100 | | Minus |
BS32588.pep Sequence
Translation from 16 to 1293
> BS32588.pep
MSPNNSAEKPVNPNEHLHIPKWINEEYFQPIIEKDVENFDKIINLVPIAA
TAPGENYTSIMIRVIVDILLKDGSEQRVSYILKTMLEADSGADVIDGMGL
FPKERKMYEVHIPQFVKLYKEAGLEIELAPKCLHVDATDELITMVFEDLS
RQNFKNFDRLKGFDLPHMREVLRKLAELHAASVVAKEINGPYDAMYNMSI
YNEQSRDLFESLGKQREEQFLKAMRNWDLENAESYIARMWDPLEVFEEAV
QVNQVDEDEFNVLNHGDCWSNNIMFNYKDNGEIDRTILVDLQVGKWGSPA
QDLWYLITTSASLDIKIKEFDHFIQIYHQRLAECLKLLNYSKPIPTLRDL
HIMMLKYGFWGPLTAMGVMVATLMPTDKDANMKMILAQGPEADAIRYRTF
INPYYAKAMKVLLPFFDNKGLLKSN*
BS32588.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:45:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10550-PD | 425 | CG10550-PD | 1..425 | 1..425 | 2233 | 100 | Plus |
| CG10550-PC | 425 | CG10550-PC | 1..425 | 1..425 | 2233 | 100 | Plus |
| CG10550-PB | 425 | CG10550-PB | 1..425 | 1..425 | 2233 | 100 | Plus |
| CG31288-PA | 428 | CG31288-PA | 8..421 | 11..422 | 928 | 42.5 | Plus |
| CG31102-PB | 420 | CG31102-PB | 2..418 | 3..422 | 885 | 41.6 | Plus |
