BS32673.complete Sequence
401 bp assembled on 2013-09-16
GenBank Submission: KX805999
> BS32673.complete
GAAGTTATCAGTCGACATGAGCAGCACATGGATGGGCAGAGCTCCAGAAC
CGGCCGACACGGAAATGGTGACCGTAACCACGCAGCCAAACTATGGGGTG
GTGGTGACCCAGATACCCGTCTACACCCTGAACGGAGTGGGGCCGGGCGC
ACATCCACTGGCTGTGGGCTGCAAGCCGATGAGGGTGAGGTGTCCGTCCT
GCAGGGGCGAGGTCACCACCAGTCTGGCCACGTCCCCCACCCGCAAGACC
CACATGTGCGCTCTGACCTTGTATATCTGCTGCTGCTGGCCCTTCATCTG
CCTTCCCTACTTCATCAACTACTGCAAGAGTGTCCAGCACTACTGTCCCA
ACTGTGGATGCCACATTGGGAGCTATAGCATTTGAAAGCTTTCTAGACCA
T
BS32673.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:00:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13511-RB | 369 | CG13511-PB | 1..369 | 17..385 | 1845 | 100 | Plus |
| CG13511-RA | 369 | CG13511-PA | 1..369 | 17..385 | 1845 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:00:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42565-RB | 2577 | CG42565-RB | 1163..1533 | 15..385 | 1855 | 100 | Plus |
| CG13511-RB | 2577 | CG13511-RB | 1163..1533 | 15..385 | 1855 | 100 | Plus |
| CG13511-RA | 496 | CG13511-RA | 20..390 | 15..385 | 1855 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:00:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22659710..22659977 | 15..282 | 1340 | 100 | Plus |
| 2R | 25286936 | 2R | 22660035..22660138 | 282..385 | 520 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 14:00:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 642..689 | 277..324 | 114 | 70.8 | Plus |
| Fw3 | 3132 | Fw3 FW3 3132bp | 578..615 | 60..98 | 107 | 76.9 | Plus |
BS32673.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 12:03:58 Download gff for
BS32673.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13511-RA | 21..388 | 17..384 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:39:29 Download gff for
BS32673.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13511-RA | 22..389 | 17..384 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:39:29 Download gff for
BS32673.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22659712..22659977 | 17..282 | 100 | -> | Plus |
| 2R | 22660036..22660137 | 283..384 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 12:03:58 Download gff for
BS32673.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18547217..18547482 | 17..282 | 100 | -> | Plus |
| arm_2R | 18547541..18547642 | 283..384 | 100 | | Plus |
BS32673.pep Sequence
Translation from 16 to 384
> BS32673.pep
MSSTWMGRAPEPADTEMVTVTTQPNYGVVVTQIPVYTLNGVGPGAHPLAV
GCKPMRVRCPSCRGEVTTSLATSPTRKTHMCALTLYICCCWPFICLPYFI
NYCKSVQHYCPNCGCHIGSYSI*
BS32673.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:45:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13511-PB | 122 | CG13511-PB | 1..122 | 1..122 | 699 | 100 | Plus |
| CG13511-PA | 122 | CG13511-PA | 1..122 | 1..122 | 699 | 100 | Plus |
| CG13510-PC | 129 | CG13510-PC | 57..127 | 50..120 | 226 | 47.9 | Plus |
| CG13510-PB | 129 | CG13510-PB | 57..127 | 50..120 | 226 | 47.9 | Plus |
| CG13510-PA | 129 | CG13510-PA | 57..127 | 50..120 | 226 | 47.9 | Plus |
