BS32707.complete Sequence
1568 bp assembled on 2014-03-03
GenBank Submission: KX804934
> BS32707.complete
GAAGTTATCAGTCGACATGGAAGAAAAGGTTCTGCCGAAATTCGTATTAC
CGTCTCCAAAGTTCGGCAAGCCCAATGGATCCACCACATCCAATCACCTC
TACCTGACCCCCAGCGGGATGACCCTGCTGCCGCGCTCCAAGCAACCGCC
GCCCATGTACGGTGCACGAGGATCAACAGTGCCAGCTAAATATCTGCACC
AAGAACAAAGCAGCCCAGTGAGCGTACCTGCATCCCCGCCAGTTTACCAT
TCTCCTCCGCGACCGGAATTTTGTCACACATGTGTCATGGAGCTGGCCAA
CTCTCAGGATATGAAACTCCACCTGGAGCAACACGAGTTCTGCCCTGCCG
ATGACTGCGACTTTGCGGCGCTCCACAACATCCTGGAACGTCACATAGAA
TCCAATCACATCACAGGAACCTACGTAAAGGTAAAGAAAGTTTGGTCCGA
GGAAGAATTGGCCGCTTGGAGGGCAGAACGAAGAAAAAAATTTCCCACTG
CGGCCAATGTTGAGCTGGCTAGATTAGCCAAGGAACAGCGAATTAAACGC
GGAGAGCGCCTGGAGGCTTCGAAATCTCGCTTCGGAAACCGGGAAGATCG
CCAACGGACGCGAGGAGGACCCCAGGGAGATCACAAAGTTCGTTTCGATC
CGAAAAACAAGAAAAAGAGATGTGCCAAAGGGAAAGCCAATGAAAAGAAG
AAAAAACGTGTTGGTACTGATAAAGCAAACGAAGCTTTGAAGCAGAAAGA
AACTAATGAAGATAAAAAAGAAGAGGAAGTTAATTTGTGCTCCCTGGGAA
ATGCTAAATTTGGAGGAACTGGACAAATGCCGGAGTACCAGCACTTTAAG
GCAAAAGTTCAAAAGAAGGATAATGCTTTGTCTAGCTTTCTTGGAATGTA
CGGGTCAGATAGTGACGAAGAAAGTGAAGCTGAGAGTGATGATCAGAATA
CAGCAGACTGCAGTAAACAAATCCCAGCACAAGTAGAGAGCTCCCAAAGT
ATGCCATCTGAAATCACAGAAATGGGTCCAGCCCTTGAGGCTTCAAATAC
ACCTAACTCTGTTGATAATACTCAAACTTGTGAAGACTTTACACCTATGT
TGGAAATGACATCATCAGACCAAGTGCCGCGAGAAATAAGCAACATTAGT
CAAATAACTACATCTAACTCAGAGCCTGCCAAGGAAGATGGCTCCTCCGA
CGAAGGACCGGATGAAGAGCCCTTCCAGCGAGTGACCGAAACTATAACAG
CGTCAGATCCAGTCAAACCACCTCCTGAACCAATGGAACCGAAGCCACAA
ACTGCACCCAAAAGAGCAGCTCCAAAGCGAATTTATGGCTTGAACTACAA
GAGAGCGCGCAAGCAAACCCCGAACACTATGTTGTCGAAACTATTAGAAT
CCGATATACGCCATGAAAGAAATGTCCTGCTGCAGTGCGTGCGACATGTT
TGCGAGAGAAATTTCTTTGGCATTGGTCAAGCTAAACCAAATCAAGAAAC
GTTGGTTACCACTTGTGATAAAACCGTTGATTCAACACCGGATGCATTAT
AAAAGCTTTCTAGACCAT
BS32707.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 15:02:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nufip-RA | 1536 | CG4076-PA | 1..1536 | 17..1552 | 7650 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:02:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nufip-RA | 1640 | CG4076-RA | 56..1595 | 13..1552 | 7655 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 15:02:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18746656..18747718 | 1552..490 | 5315 | 100 | Minus |
| 3L | 28110227 | 3L | 18747776..18748056 | 489..209 | 1375 | 99.3 | Minus |
| 3L | 28110227 | 3L | 18748117..18748312 | 208..13 | 965 | 99.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 15:02:14 has no hits.
BS32707.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-03-03 17:25:06 Download gff for
BS32707.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nufip-RA | 60..1593 | 17..1550 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:29:53 Download gff for
BS32707.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nufip-RA | 60..1593 | 17..1550 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:29:53 Download gff for
BS32707.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18746658..18747718 | 490..1550 | 100 | <- | Minus |
| 3L | 18747776..18748056 | 209..489 | 99 | <- | Minus |
| 3L | 18748117..18748308 | 17..208 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-03-03 17:25:06 Download gff for
BS32707.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18739758..18740818 | 490..1550 | 100 | <- | Minus |
| arm_3L | 18740876..18741156 | 209..489 | 99 | <- | Minus |
| arm_3L | 18741217..18741408 | 17..208 | 100 | | Minus |
BS32707.pep Sequence
Translation from 16 to 1551
> BS32707.pep
MEEKVLPKFVLPSPKFGKPNGSTTSNHLYLTPSGMTLLPRSKQPPPMYGA
RGSTVPAKYLHQEQSSPVSVPASPPVYHSPPRPEFCHTCVMELANSQDMK
LHLEQHEFCPADDCDFAALHNILERHIESNHITGTYVKVKKVWSEEELAA
WRAERRKKFPTAANVELARLAKEQRIKRGERLEASKSRFGNREDRQRTRG
GPQGDHKVRFDPKNKKKRCAKGKANEKKKKRVGTDKANEALKQKETNEDK
KEEEVNLCSLGNAKFGGTGQMPEYQHFKAKVQKKDNALSSFLGMYGSDSD
EESEAESDDQNTADCSKQIPAQVESSQSMPSEITEMGPALEASNTPNSVD
NTQTCEDFTPMLEMTSSDQVPREISNISQITTSNSEPAKEDGSSDEGPDE
EPFQRVTETITASDPVKPPPEPMEPKPQTAPKRAAPKRIYGLNYKRARKQ
TPNTMLSKLLESDIRHERNVLLQCVRHVCERNFFGIGQAKPNQETLVTTC
DKTVDSTPDAL*
BS32707.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 10:01:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nufip-PA | 511 | CG4076-PA | 1..511 | 1..511 | 2699 | 100 | Plus |
