Clone BS32708 Report

Search the DGRC for BS32708

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:327
Well:8
Vector:pDNR-Dual
Associated Gene/TranscriptLa-RA
Protein status:BS32708.pep: full length peptide match
Sequenced Size:1205

Clone Sequence Records

BS32708.complete Sequence

1205 bp assembled on 2014-01-22

GenBank Submission: KX803312

> BS32708.complete
GAAGTTATCAGTCGACATGGCCGAAGTTGCTGAAACCCCGAGTGTGGAAG
CCCAGGAAGAGGTAGCACAGCCCGCCGAGGCGCAGGTGCTGGAGGCGAAG
AACGGCGACGCCAAGAAGGACCCGGCTCCCGCAGCAGAGGAGGCCGCTGG
CGGCTTCACCAAACAGGAGCGCGCCATAATCCGGCAGGTAGAGTACTACT
TCGGCGATGCCAATCTGAATCGGGACAAGTTTCTGCGCGAGCAGATCGGC
AAGAACGAGGACGGCTGGGTGCCCCTGTCGGTGCTCGTTACCTTCAAGAG
ATTGGCCTCCCTGTCCACGGACTTATCTGAGATCGTGGCTGCCCTGAACA
AATCCGAGGAGGGCCTCGTGGAGATTAGCGAAGACAAACTTAGCCTGCGT
CGCCATCCGGAGCGTCCTATTCCAGAGCACAACGAAGAGCGGCGCAAGGA
GATCCAGGAACGGACCGCATACGCCAAGGGCTTCCCCCTAGATTCGCAGA
TTAGCGAACTGCTCGACTTTGCTGCCAACTACGACAAAGTGGTCAACCTG
ACCATGCGCAAGCACTATGACAAGCCCACCAAGTCGTACAAGTTCAAGGG
CAGCATCTTCCTTACTTTCGAGACCAAGGACCAGGCAAAGGCCTTCCTCG
AACAGGAGAAGATCGTTTATAAGGAGCGCGAGCTGCTGCGTAAATGGCAG
GTGGACTACCTTAAGGAGAAGCAGGAGGAATACGCCCAGAAGAACGAGAA
GCGCAAAAACAAAAAGGAGGCCAAGCCTGAGCCTGCCTTCGAGCTGCCCA
AGAACGCCATTGTTGTCTTCGAGGGCGCTCCGGAGACATCTAGCCGCGAG
GAAATTCGCGAAGCCTTCGAGAAGATCAAGGACTTCGAGGTGGCCTACAT
TGAGTTCGCCAAGGGCGAAACCAAGGGCTCTGTGCGGCTGACGGAGGCCG
ATGCGGCCGAAAAGTACATTGCCAAGGTGGAGGAAGGCAAGCTCAAGTTC
AAAGATGAGGTCTCTCTGTCGCTGCGAAAGGCCACCGAGGAGGAGGAGAA
GGAGTTCATCGACAAGGCCATAGAATTCATGAAGAAGCGACGCGATTTCA
CCAGGAACAAGGGCAAGCGCTTCAATCGCAAGCGCCACGGCGGAAACGAC
CACAAACATGGCGGTGGTAAGAAGGCGCGTGGGGATTAAAAGCTTTCTAG
ACCAT

BS32708.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:43:18
Subject Length Description Subject Range Query Range Score Percent Strand
La-RA 1173 CG10922-PA 1..1173 17..1189 5835 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:43:19
Subject Length Description Subject Range Query Range Score Percent Strand
La-RA 1549 CG10922-RA 89..1261 17..1189 5835 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:43:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20348950..20349924 991..17 4845 99.8 Minus
2L 23513712 2L 20348681..20348880 1189..990 1000 100 Minus
Blast to na_te.dros performed 2014-11-28 14:43:17
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy3 6973 gypsy3 GYPSY3 6973bp 3084..3113 224..253 114 86.7 Plus

BS32708.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-22 12:51:07 Download gff for BS32708.complete
Subject Subject Range Query Range Percent Splice Strand
La-RA 89..1259 17..1187 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:21:06 Download gff for BS32708.complete
Subject Subject Range Query Range Percent Splice Strand
La-RA 89..1259 17..1187 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:21:06 Download gff for BS32708.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20348683..20348878 992..1187 100 <- Minus
2L 20348950..20349924 17..991 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-22 12:51:07 Download gff for BS32708.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20348683..20348878 992..1187 100 <- Minus
arm_2L 20348950..20349924 17..991 99   Minus

BS32708.pep Sequence

Translation from 16 to 1188

> BS32708.pep
MAEVAETPSVEAQEEVAQPAEAQVLEAKNGDAKKDPAPAAEEAAGGFTKQ
ERAIIRQVEYYFGDANLNRDKFLREQIGKNEDGWVPLSVLVTFKRLASLS
TDLSEIVAALNKSEEGLVEISEDKLSLRRHPERPIPEHNEERRKEIQERT
AYAKGFPLDSQISELLDFAANYDKVVNLTMRKHYDKPTKSYKFKGSIFLT
FETKDQAKAFLEQEKIVYKERELLRKWQVDYLKEKQEEYAQKNEKRKNKK
EAKPEPAFELPKNAIVVFEGAPETSSREEIREAFEKIKDFEVAYIEFAKG
ETKGSVRLTEADAAEKYIAKVEEGKLKFKDEVSLSLRKATEEEEKEFIDK
AIEFMKKRRDFTRNKGKRFNRKRHGGNDHKHGGGKKARGD*

BS32708.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:50:04
Subject Length Description Subject Range Query Range Score Percent Strand
La-PA 390 CG10922-PA 1..390 1..390 1985 100 Plus
Larp7-PA 595 CG42569-PA 17..334 2..350 240 25.1 Plus