BS32712.complete Sequence
440 bp assembled on 2014-01-22
GenBank Submission: KX806183
> BS32712.complete
GAAGTTATCAGTCGACATGGTCAAGCTGGCATCAACATCCAATGCCATTT
GGTGGATTAAGAATCCCAAGGCAGCCGGGGAACATAATTCCAAAGGTAAA
CGCAAGGAGTCCTTGGGCTCAGCCTTCTGCTTGGATATGGCGGATCTGGT
TAGAAACATATCCCTACAGGGTTACAATAAGCTTTTGTCACCGGACTTGA
CCTTGGGACAAAGATTGATTTGGTTGCTGGTACACATGGCCACCACCGTC
TCCCTGATTGTGGTGCTCTCGCTAACATGGGAGCAGTTCGTGGCCCAATC
CTTTGTGACCAATCTGAAGGATCCTCTTTTTCCAGTGGAGAATGTGCCAT
TCCCGGCTGTTTCCATCTGCCCCAACAATCGCATCTCTCGCCAGGCAGTT
ATCCAATATGCTGAAGAATTGTGAAAGCTTTCTAGACCAT
BS32712.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:42:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ppk22-RC | 408 | CG31105-PC | 1..408 | 17..424 | 2040 | 100 | Plus |
| ppk22-RB | 1686 | CG31105-PB | 1..405 | 17..421 | 2025 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:42:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ppk22-RC | 532 | CG31105-RC | 91..498 | 17..424 | 2040 | 100 | Plus |
| ppk22-RB | 1813 | CG31105-RB | 91..495 | 17..421 | 2025 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:42:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24859240..24859452 | 424..212 | 1065 | 100 | Minus |
| 3R | 32079331 | 3R | 24859515..24859711 | 213..17 | 985 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:42:49 has no hits.
BS32712.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-22 12:50:57 Download gff for
BS32712.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31105-RC | 24..430 | 17..423 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:20:55 Download gff for
BS32712.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ppk22-RC | 91..497 | 17..423 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:20:55 Download gff for
BS32712.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24859515..24859711 | 17..213 | 100 | | Minus |
| 3R | 24859241..24859450 | 214..423 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-22 12:50:57 Download gff for
BS32712.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20684963..20685172 | 214..423 | 100 | <- | Minus |
| arm_3R | 20685237..20685433 | 17..213 | 100 | | Minus |
BS32712.pep Sequence
Translation from 16 to 423
> BS32712.pep
MVKLASTSNAIWWIKNPKAAGEHNSKGKRKESLGSAFCLDMADLVRNISL
QGYNKLLSPDLTLGQRLIWLLVHMATTVSLIVVLSLTWEQFVAQSFVTNL
KDPLFPVENVPFPAVSICPNNRISRQAVIQYAEEL*
BS32712.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:49:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ppk22-PC | 135 | CG31105-PC | 1..135 | 1..135 | 693 | 100 | Plus |
| ppk22-PB | 561 | CG31105-PB | 1..135 | 1..135 | 693 | 100 | Plus |
| ppk24-PA | 595 | CG15555-PA | 16..154 | 6..135 | 185 | 28.9 | Plus |
| ppk16-PA | 531 | CG34059-PA | 44..150 | 29..135 | 148 | 28 | Plus |
