BS32713.complete Sequence
1169 bp assembled on 2014-01-22
GenBank Submission: KX800635
> BS32713.complete
GAAGTTATCAGTCGACATGAATTCGCAATCGGCAGTGCGTCGCTATCCAC
ACAGTTTTTCCATCGAACAAATTCTGGCCAAGCCGGAAATGCGCAGCTCC
ACTTCCTTTGAGGACTCCGTGCAGGATGAAAGCGGTCGCGGTGGCAATTG
TCTCGGTGCTTCACGGGCTTCCAGTCCGGCAACATCGAGTTGCTTGGATG
ACAACATGGACGACGGCAAAAGTGATATCGATTTGGCCTCAGATGATGGA
AACGGCCTTGGTGATGACCGCAAAAAGCGACCGCGTACCGCCTTCTCGGC
AGCTCAAATCAAAGCACTGGAAACGGAGTTCGAAAGGGGAAAGTATCTTT
CGGTGGCGAAGCGAACTGCACTGGCCAAGCAGCTGCAGCTCACAGAAACG
CAGATCAAGATCTGGTTCCAAAACCGCCGCACCAAGTGGAAGCGCAAGTA
CACCTCGGACGTGGAAACGCTGGCCTCGCACTATTACGCCCAGCTGGGTA
TCGGGGGATTGGCCAGGCCGATGGTGGTTGGTGATCGCCTTTGGCTCTTT
AGCCAAACGCCAACGGGTCCCACGCCCATTCAGTCCATTATGCTAAATGG
CAGTGGCTCCGCTGCACCCATGGCCTCAGCAACGACGGCCACCGGCTCAC
CCATGCGTCCGTACGCGACTAGCGGCGGAATGCCACCGTTGCCGGGTCCC
AGTGTGATGGAGAGTGCCCGTAATGCCATACTGGCACGTGGACAACCCTT
GAACTTCGCCCTGCCCTTTGGCGTGGCTAAGCCGCCGGCGGGTGGTGTGC
CTGCGGCCAGCTACATCCCTCGCTGCAAGCCGTATGCGACCAGCTATGTG
GACTACGCGGCGTCACTGCCAACGAACGAGAGCTATCTGCAAATGAAGTA
CGCGACGCTGCCGCCGGAAGCGGAAAGCGGCGCCTCCAATGGCCTCGCCG
AACTGGAACGCGTCTTTGGGGATGCCAATGCCAACTTTCTGCAACAACGC
AGCACGCCAGTCGCTGGAACAGCCACAGCCTACGGCCACGATGGATTAAA
TCAGGCGCAGCGGAGCCGCAGACCCACACAATCGGAGTCCGAGTGCAGCG
ACATTGACTGCGAGCATCTGGACGAGGATGAGGAGCCACCTGCTGCGGAG
TGAAAGCTTTCTAGACCAT
BS32713.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:43:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lms-RC | 1137 | CG13424-PC | 1..1137 | 17..1153 | 5685 | 100 | Plus |
| lms-RB | 1137 | CG13424-PB | 1..1137 | 17..1153 | 5685 | 100 | Plus |
| NK7.1-RD | 2166 | CG8524-PD | 1277..1347 | 372..442 | 235 | 88.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:43:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lms-RC | 2030 | CG13424-RC | 80..1220 | 15..1155 | 5705 | 100 | Plus |
| lms-RB | 1551 | CG13424-RB | 80..1220 | 15..1155 | 5705 | 100 | Plus |
| NK7.1-RD | 2731 | CG8524-RD | 1758..1828 | 372..442 | 235 | 88.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:43:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20558389..20559143 | 401..1155 | 3775 | 100 | Plus |
| 2R | 25286936 | 2R | 20556956..20557196 | 15..255 | 1205 | 100 | Plus |
| 2R | 25286936 | 2R | 20558086..20558235 | 254..403 | 750 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:43:28 has no hits.
BS32713.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-22 12:51:13 Download gff for
BS32713.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lms-RB | 82..1217 | 17..1152 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:21:11 Download gff for
BS32713.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lms-RB | 82..1217 | 17..1152 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:21:11 Download gff for
BS32713.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20556958..20557195 | 17..254 | 100 | -> | Plus |
| 2R | 20558087..20558235 | 255..403 | 100 | -> | Plus |
| 2R | 20558392..20559140 | 404..1152 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-22 12:51:13 Download gff for
BS32713.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16445897..16446645 | 404..1152 | 100 | | Plus |
| arm_2R | 16444463..16444700 | 17..254 | 100 | -> | Plus |
| arm_2R | 16445592..16445740 | 255..403 | 100 | -> | Plus |
BS32713.pep Sequence
Translation from 16 to 1152
> BS32713.pep
MNSQSAVRRYPHSFSIEQILAKPEMRSSTSFEDSVQDESGRGGNCLGASR
ASSPATSSCLDDNMDDGKSDIDLASDDGNGLGDDRKKRPRTAFSAAQIKA
LETEFERGKYLSVAKRTALAKQLQLTETQIKIWFQNRRTKWKRKYTSDVE
TLASHYYAQLGIGGLARPMVVGDRLWLFSQTPTGPTPIQSIMLNGSGSAA
PMASATTATGSPMRPYATSGGMPPLPGPSVMESARNAILARGQPLNFALP
FGVAKPPAGGVPAASYIPRCKPYATSYVDYAASLPTNESYLQMKYATLPP
EAESGASNGLAELERVFGDANANFLQQRSTPVAGTATAYGHDGLNQAQRS
RRPTQSESECSDIDCEHLDEDEEPPAAE*
BS32713.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:50:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lms-PC | 378 | CG13424-PC | 1..378 | 1..378 | 1961 | 100 | Plus |
| lms-PB | 378 | CG13424-PB | 1..378 | 1..378 | 1961 | 100 | Plus |
| B-H2-PA | 645 | CG5488-PA | 299..642 | 21..377 | 240 | 27.6 | Plus |
| B-H2-PB | 303 | CG5488-PB | 13..300 | 61..377 | 231 | 28.1 | Plus |
| NK7.1-PD | 721 | CG8524-PD | 328..514 | 16..214 | 228 | 35 | Plus |
