BS32768.complete Sequence
1121 bp assembled on 2014-01-22
GenBank Submission: KX804490
> BS32768.complete
GAAGTTATCAGTCGACATGTCATCAAACAGAATCCGGCCGGAGTTGGTAC
TCCTGCAGCTGCTGCTACTGGCGGCCACATTAATCCCTTTGCTGCAGGCC
GGGATAGTTACAGCTCCGTACTCCGAATCGGATTCGGATTTGGATTCGAA
TCCGGACACCACCGCCACCACCATCGCCACCATCGCCACCATCACCACCG
ACAACTACAACCCGCATGCGGAGGAGCTGCAACTGGAATCGGAGACGGAG
GCCACTGCTGCTCAAGTGGATGGCCAACGCATCGACTGCAAATTGACTTT
CGATGCGGCGACAATGGACTCGTTAGGCTGCCACAATGAGGGGGCGTTGC
CGGAGAGGGGGGCGTTACCAGGCAGTGGTAATAAGCCGGTGGAGGAGATG
CCTGAGGCAAATCCAGACTGGCGGCGCCACTTGAAGTCACCGGACAGCCA
GCCCATCTATGAATTACAATTGGTTGTTTGGCCCAGTGACATCGAGGACG
GTGATGACTTCAGTCCACCGCTGTCCACTACAACAACAACAGAAGCAACA
ACAACGACAGCTAGGACCACTAGAGCCACCAGTAGCACCACTAGCATCAC
CCCCAAGCCCACCCAAATTGGGACACCTATTGAGCAAATATGGCCATTGT
ACGAGGATCAATTGGTTGTATTTCCGCAAATGGACTTTGAAGAGGAGAAT
CTTGATTATTTCTTCGACGAAGTGCCACCATCCACATCGTCGACCACCGG
TCGCCCGTTGACCACCAGTCATCCCACCGGCACGCCCACTCCCACGCCCA
TTTATGTTGTGCAAAACTATCACGTTATACACCCCAATGGCACCGAGGAG
TACAAATTGGTGATGAGCAACGGCCTGGTGAACTACAAGAAGCTGTACTC
CAAGAAAGTGGGTGACCGGTTGATCAACGTTCAGGAGGGCTACAATTCAG
TGCCCATTCCAGGACCTAAAAACCAAATCCAGACACAGTACTATATTGCC
GACGAGCGGGGCTACAATGTCTATAGAATCGAGCTCCACTATCACCAGCC
AGGGTTGTTGCCCAAACATTTGCATTACAAAGCCACAAAAGCGACCAATA
TGTGAAAGCTTTCTAGACCAT
BS32768.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:45:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11816-RB | 1089 | CG11816-PB | 1..1089 | 17..1105 | 5445 | 100 | Plus |
| CG11816-RD | 1089 | CG11816-PD | 1..1089 | 17..1105 | 5445 | 100 | Plus |
| CG11816-RC | 1041 | CG11816-PC | 1..1012 | 17..1028 | 5060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:45:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11816-RB | 1470 | CG11816-RB | 14..1106 | 14..1106 | 5465 | 100 | Plus |
| CG11816-RD | 1958 | CG11816-RD | 502..1594 | 14..1106 | 5465 | 100 | Plus |
| CG11816-RC | 1808 | CG11816-RC | 502..1516 | 14..1028 | 5075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:45:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13553411..13554252 | 855..14 | 4210 | 100 | Minus |
| X | 23542271 | X | 13553092..13553264 | 1028..856 | 865 | 100 | Minus |
| X | 23542271 | X | 13552923..13553000 | 1106..1029 | 390 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 14:45:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2304..2407 | 512..617 | 164 | 64.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2442..2526 | 528..613 | 157 | 66.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2799..2910 | 531..644 | 141 | 60.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2385..2468 | 525..606 | 127 | 63.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 5629..5675 | 511..557 | 127 | 74.5 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 504..583 | 519..599 | 123 | 63 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1124..1160 | 525..561 | 122 | 81.1 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3592..3624 | 523..555 | 111 | 81.8 | Plus |
BS32768.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-22 12:52:06 Download gff for
BS32768.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11816-RD | 505..1592 | 17..1104 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:22:15 Download gff for
BS32768.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11816-RD | 505..1592 | 17..1104 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:22:15 Download gff for
BS32768.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13552925..13553000 | 1029..1104 | 100 | <- | Minus |
| X | 13553092..13553264 | 856..1028 | 100 | <- | Minus |
| X | 13553411..13554249 | 17..855 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-22 12:52:06 Download gff for
BS32768.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13447125..13447297 | 856..1028 | 100 | <- | Minus |
| arm_X | 13446958..13447033 | 1029..1104 | 100 | <- | Minus |
| arm_X | 13447444..13448282 | 17..855 | 100 | | Minus |
BS32768.pep Sequence
Translation from 16 to 1104
> BS32768.pep
MSSNRIRPELVLLQLLLLAATLIPLLQAGIVTAPYSESDSDLDSNPDTTA
TTIATIATITTDNYNPHAEELQLESETEATAAQVDGQRIDCKLTFDAATM
DSLGCHNEGALPERGALPGSGNKPVEEMPEANPDWRRHLKSPDSQPIYEL
QLVVWPSDIEDGDDFSPPLSTTTTTEATTTTARTTRATSSTTSITPKPTQ
IGTPIEQIWPLYEDQLVVFPQMDFEEENLDYFFDEVPPSTSSTTGRPLTT
SHPTGTPTPTPIYVVQNYHVIHPNGTEEYKLVMSNGLVNYKKLYSKKVGD
RLINVQEGYNSVPIPGPKNQIQTQYYIADERGYNVYRIELHYHQPGLLPK
HLHYKATKATNM*
BS32768.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:51:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11816-PB | 362 | CG11816-PB | 1..362 | 1..362 | 1911 | 100 | Plus |
| CG11816-PD | 362 | CG11816-PD | 1..362 | 1..362 | 1911 | 100 | Plus |
| CG11816-PC | 346 | CG11816-PC | 1..339 | 1..339 | 1774 | 99.7 | Plus |
| CG11816-PA | 346 | CG11816-PA | 1..339 | 1..339 | 1774 | 99.7 | Plus |
