BS32777.complete Sequence
1247 bp assembled on 2014-01-22
GenBank Submission: KX803354
> BS32777.complete
GAAGTTATCAGTCGACATGACAGAAGGACATGAAAGCGACTTCTTAGTAA
CAGTACGCGCACAGGTAATGACCAGAGACGAGAGCACCGAGGGCTGGCTT
CCGCTGGCCGGGGGTGGCCTGGCCAATGTTTCGATCCGGAAGCGGGCTAG
GCTATCCCCATTGGCATCGGGTCATGACTACATCATCTACGGGCAGAGAA
TATCCGATCAGAGCGTCATCTTGAGCTGTGTGATCAATCGTGATCTGAAG
TATTACAAAGTAATGCCTACATTTCATCATTGGCGCGCAGGGAAGCAGCG
GAATGGACTCACATTTCAAACGGCCGCCGATGCGCGAGCCTTTGACAAGG
GCGTCCTGCGCGCCTACAACGAGCTGATCGATGATGATGTATTCATGACC
CTGGACTTACCTGTGGAGAGCGAGAGTTTACAAAAGATCCATTCAAGCCC
CGAGGGCAGCGAGAAAAGTCACAAGAGCGTCAGCAACAACTCCGACTCGG
AGAAGCTGCCTCCGCCGCCCATTCACTACATATCCACGGACAAAACATCG
GCCACCACGTCGCCGCCAGACGCACCGCCCGCTTCTGCTGCTCCATCGCC
GGCGACGGCCGGCCAGATAGCGGCCAGTGAGAACTACTCGTACGTGACGC
TGACGGCGGTGCACCACGACTACAACTATCCGGTGGTGGACCAGCCGGTG
GGGGCGCAGGTGCTCAATGCTCGCAGGGAGTCGATCAGTGCACTAAAGAA
GCGCAACGCTCTGGAGGCAGCGCAGGCGATGGCGGCGGCTCAGACGGCGG
CGGGTGGTGGACTGGCCTGTCGCGACGGCGGATCGGGAAAGCCACTGCAC
AAGCCAAACGTATCCGACATACTGAAGAAGGAGACGCGCCTGCGATGCCG
CTACTGCCACGAGCTGTACAGCGAGGACTTCAATCGGCGGGGCGCCTGCG
AATATGCCCCGGATGCGTTTCGCAGCGGCTACGAGTGCATCTCTGGGATG
GGCTGTGCCCGTTGCATGATCTACCACTGCATGAGCGACGCCGAGGGCGA
GACGGCCCAGCATCCGTGCGACTGCAGCGCCAGCGAGGCCGGCTGCAGCA
AGCGCTGGCTGGGCCTGGCGATCCTCTCGTTGTTCGTGCCCTGCCTGTGG
TGCTATCCGCCGCTCCGCGCCTGCCACTTGGCCGGCATCCACTGCGGCCT
CTGCGGCGGGCAGCACAAGCCGCATGTCTGAAAGCTTTCTAGACCAT
BS32777.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:46:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spred-RB | 1215 | CG10155-PB | 1..1215 | 17..1231 | 6075 | 100 | Plus |
| Spred-RC | 1560 | CG10155-PC | 429..1281 | 379..1231 | 4250 | 99.9 | Plus |
| Spred-RA | 1281 | CG10155-PA | 429..1281 | 379..1231 | 4250 | 99.9 | Plus |
| Spred-RC | 1560 | CG10155-PC | 1..367 | 17..383 | 1835 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:46:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spred-RB | 2525 | CG10155-RB | 427..1642 | 16..1231 | 6080 | 100 | Plus |
| Spred-RC | 4167 | CG10155-RC | 922..1774 | 379..1231 | 4250 | 99.9 | Plus |
| Spred-RA | 2657 | CG10155-RA | 922..1774 | 379..1231 | 4250 | 99.9 | Plus |
| Spred-RC | 4167 | CG10155-RC | 493..860 | 16..383 | 1840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:46:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14762039..14762796 | 1231..474 | 3790 | 100 | Minus |
| 2R | 25286936 | 2R | 14764058..14764239 | 216..35 | 910 | 100 | Minus |
| 2R | 25286936 | 2R | 14763831..14763999 | 383..215 | 845 | 100 | Minus |
| 2R | 25286936 | 2R | 14762919..14763013 | 473..379 | 460 | 98.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:46:03 has no hits.
BS32777.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-22 12:52:13 Download gff for
BS32777.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spred-RB | 428..1641 | 17..1230 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:22:24 Download gff for
BS32777.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spred-RB | 428..1641 | 17..1230 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:22:24 Download gff for
BS32777.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14762040..14762796 | 474..1230 | 100 | <- | Minus |
| 2R | 14762919..14763008 | 384..473 | 100 | <- | Minus |
| 2R | 14763831..14763999 | 215..383 | 100 | <- | Minus |
| 2R | 14764060..14764237 | 37..214 | 100 | <- | Minus |
| 2R | 14768004..14768023 | 17..36 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-22 12:52:13 Download gff for
BS32777.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10649545..10650301 | 474..1230 | 100 | <- | Minus |
| arm_2R | 10650424..10650513 | 384..473 | 100 | <- | Minus |
| arm_2R | 10651336..10651504 | 215..383 | 100 | <- | Minus |
| arm_2R | 10651565..10651742 | 37..214 | 100 | <- | Minus |
| arm_2R | 10655509..10655528 | 17..36 | 100 | | Minus |
BS32777.pep Sequence
Translation from 16 to 1230
> BS32777.pep
MTEGHESDFLVTVRAQVMTRDESTEGWLPLAGGGLANVSIRKRARLSPLA
SGHDYIIYGQRISDQSVILSCVINRDLKYYKVMPTFHHWRAGKQRNGLTF
QTAADARAFDKGVLRAYNELIDDDVFMTLDLPVESESLQKIHSSPEGSEK
SHKSVSNNSDSEKLPPPPIHYISTDKTSATTSPPDAPPASAAPSPATAGQ
IAASENYSYVTLTAVHHDYNYPVVDQPVGAQVLNARRESISALKKRNALE
AAQAMAAAQTAAGGGLACRDGGSGKPLHKPNVSDILKKETRLRCRYCHEL
YSEDFNRRGACEYAPDAFRSGYECISGMGCARCMIYHCMSDAEGETAQHP
CDCSASEAGCSKRWLGLAILSLFVPCLWCYPPLRACHLAGIHCGLCGGQH
KPHV*
BS32777.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:51:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spred-PB | 404 | CG10155-PB | 1..404 | 1..404 | 2166 | 100 | Plus |
| Spred-PA | 426 | CG10155-PA | 1..426 | 1..404 | 2133 | 94.8 | Plus |
| Spred-PC | 519 | CG10155-PC | 1..426 | 1..404 | 2133 | 94.8 | Plus |
