BS32780.complete Sequence
620 bp assembled on 2014-01-22
GenBank Submission: KX801734
> BS32780.complete
GAAGTTATCAGTCGACATGAGGCAGCCAAGTAGACAGCACATCCTGGCGC
TCCTGATCCTCGGCAGCGCCGCCTGCCTCATCAGCGCCGTACCGCTACCG
CAGCCCGCCAACGGTAATTCCGAGCTGGACGTCCTCCAAATCCCGCTTGC
CAATGGCAAGGAAATCGATGTCTTGACATTGGGCGCCAAAGACCAAGAAT
CATTGATAGCCGATCGCAACAAACGAACGATTGGACTGCTGCGCGAACTT
TTCCCCGACATCACCAAGGAAATCGACTCCATAGTAAATCGAATTATAGC
CCAGGTGATTCGGGTGGCCGGTCCTGGTCTTCTGAATACCATATTGGCCG
GAAATCGAGGTGGTGCGGGTGGTGCAGCCGGTGGAGGTACAACGCCGGCT
AGCGATTTCGATGCCGATTTCGATGCGGACTTTGACGAGGATGACGATGT
GGCGCCATCAAGTAGTCCGGCCACACGGAGTGCAGGTAGTGCACCATCGA
GCAGCACCAACGAGGTGGAAGAAAGCCGGCGAGTGAAAATCGATTTGCCC
ACGTTTGCACCACAATCTGGAGCAGGAGCAGATGAAACGAAAGAGATAAT
ATAAAAGCTTTCTAGACCAT
BS32780.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:46:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32694-RG | 588 | CG32694-PG | 1..588 | 17..604 | 2940 | 100 | Plus |
| CG32694-RB | 1095 | CG32694-PB | 1..577 | 17..593 | 2885 | 100 | Plus |
| CG32694-RE | 564 | CG32694-PE | 1..261 | 17..277 | 1290 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:46:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32694-RG | 2729 | CG32694-RG | 246..834 | 16..604 | 2945 | 100 | Plus |
| CG32694-RB | 3153 | CG32694-RB | 246..823 | 16..593 | 2890 | 100 | Plus |
| CG32694-RH | 3542 | CG32694-RH | 1310..1647 | 267..604 | 1690 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:46:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10000350..10000676 | 267..593 | 1635 | 100 | Plus |
| X | 23542271 | X | 9993045..9993190 | 16..161 | 730 | 100 | Plus |
| X | 23542271 | X | 9999191..9999301 | 159..269 | 555 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:46:16 has no hits.
BS32780.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-22 12:52:19 Download gff for
BS32780.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32694-RG | 247..832 | 17..602 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:22:29 Download gff for
BS32780.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32694-RG | 247..832 | 17..602 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:22:29 Download gff for
BS32780.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9993046..9993189 | 17..160 | 100 | -> | Plus |
| X | 9999193..9999300 | 161..268 | 100 | -> | Plus |
| X | 10000352..10000681 | 269..602 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-22 12:52:19 Download gff for
BS32780.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9887079..9887222 | 17..160 | 100 | -> | Plus |
| arm_X | 9893226..9893333 | 161..268 | 100 | -> | Plus |
| arm_X | 9894385..9894714 | 269..602 | 98 | | Plus |
BS32780.pep Sequence
Translation from 16 to 603
> BS32780.pep
MRQPSRQHILALLILGSAACLISAVPLPQPANGNSELDVLQIPLANGKEI
DVLTLGAKDQESLIADRNKRTIGLLRELFPDITKEIDSIVNRIIAQVIRV
AGPGLLNTILAGNRGGAGGAAGGGTTPASDFDADFDADFDEDDDVAPSSS
PATRSAGSAPSSSTNEVEESRRVKIDLPTFAPQSGAGADETKEII*
BS32780.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:51:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32694-PG | 195 | CG32694-PG | 1..195 | 1..195 | 970 | 100 | Plus |
| CG32694-PB | 364 | CG32694-PB | 1..192 | 1..192 | 957 | 100 | Plus |
| CG32694-PE | 187 | CG32694-PE | 1..172 | 1..192 | 566 | 64.1 | Plus |
| CG32694-PH | 167 | CG32694-PH | 1..142 | 1..149 | 472 | 68.5 | Plus |
| CG32694-PF | 344 | CG32694-PF | 1..166 | 1..185 | 435 | 55.7 | Plus |
