BS32787.complete Sequence
1235 bp assembled on 2014-01-22
GenBank Submission: KX804219
> BS32787.complete
GAAGTTATCAGTCGACATGGAGTCAGCACAGGAAGACGCGTCCAGCACGG
ATGTGTTTCTGGTCACGGCAAACGTTGGCAGCCTGTTCGAGGACCCGGAG
AGGCTTCTGCAGCTATGGCTAAGCGAATTTCTCGCAAAGATCGCCGTCGC
ACAGCCCCGTTTCCTGGCCCTCCACCTACAGGAGGTGGGCGGCAAGACGT
ACGAGAAGTCCATGGAGTACGTCCAGGAGTTCATCAGGTGCCTCTGCGAT
GCTCCCGAAATGGGCGACTTCACCTGCGTACACATCTTCATGGACGAGGA
CTTCAAATCGGCCGAGCACTTTACGGCTCTTGGAAGTCTTTACTTTGTGC
ATAAGGATGTTGCTTCTCTGAAGATCTGGAACTTCCTAACTCACAGCTGG
GAAGAAAGTCTTCAAGATGTTAAGGATAAACATATCTATTCCGGAAATAT
TGAAACTATTGCTACCAAAGAAAAGTCCAAGTTCCCACAGCACTTCTTTC
CGGAGTGTAAATGGTCCCGAAAAGGTTTTATGCGAACCCGATGGGAAATC
AATGGCACCGTCATCGATCTAGTCAACATTCACTTATTCCACGATGCATC
CAATTTGGCTGCATGCGAAAATTTCCCCTCCGTTTATTGTAAGACGCGCA
GAAGAGCCCTAGTTCATACCATTGAAAGGTTCCATTTGGACGAACAGAAT
GGCACTGTGCCATTTTTCCTCTTTGGGGATTTTAATTTTAGATGTGACAC
TGAAGGCGTTGTGAAAGAATTAACTGAAAACTTGACCCCTCATCGCGTTC
AAAATGTCAAGAATGAGAACGATAAGATCCATTATCGCAACTCAACTGGA
AACAACGTACTTACCGTTGGAAAGAAAGAATTTAGTCATGCCGACCATCA
ACTCAAGTTCAAAGAAGACTGGCTAAAGAAATTTGACAGAGAGCTGGAGC
CACTTAAAGACGTCCTAGTCGAGTATCCAATTAAGTTCGTTCCCTCATAT
CCCTTCGAAGAAGACCCAGAAATGCCCACCGACTATATGTCTACGCGCTG
TCCGGCCTGGTGCGACCGGATTCTGATGAGTCCCCAAGTCAATGAGATTA
TCCAGAGCGATGATTGGACATATGGCATGATTGGAGAAGCTGTCTGCATG
GGCGACCATAAGGTCCTGCGGATCCCACAGCTATATCGAAGCTACCGGAG
AGCTTGGCGAACCTGGTGAAAGCTTTCTAGACCAT
BS32787.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:46:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 5PtaseI-RB | 1203 | CG42283-PB | 1..1203 | 17..1219 | 5940 | 99.6 | Plus |
| 5PtaseI-RF | 2361 | CG42283-PF | 1..1146 | 17..1162 | 5655 | 99.6 | Plus |
| 5PtaseI-RC | 2100 | CG42283-PC | 1..1146 | 17..1162 | 5655 | 99.6 | Plus |
| 5PtaseI-RF | 2361 | CG42283-PF | 2087..2144 | 1163..1220 | 290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:46:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 5PtaseI-RB | 1697 | CG42283-RB | 103..1306 | 17..1220 | 5945 | 99.6 | Plus |
| 5PtaseI-RF | 2637 | CG42283-RF | 103..1248 | 17..1162 | 5655 | 99.6 | Plus |
| 5PtaseI-RC | 2864 | CG42283-RC | 103..1248 | 17..1162 | 5655 | 99.6 | Plus |
| 5PtaseI-RF | 2637 | CG42283-RF | 2189..2246 | 1163..1220 | 290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:46:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25043224..25043466 | 1164..922 | 1215 | 100 | Minus |
| 3R | 32079331 | 3R | 25044525..25044756 | 326..95 | 1145 | 99.6 | Minus |
| 3R | 32079331 | 3R | 25044110..25044290 | 505..325 | 890 | 99.4 | Minus |
| 3R | 32079331 | 3R | 25043879..25044055 | 680..504 | 885 | 100 | Minus |
| 3R | 32079331 | 3R | 25043519..25043678 | 926..767 | 770 | 98.8 | Minus |
| 3R | 32079331 | 3R | 25043734..25043824 | 767..677 | 455 | 100 | Minus |
| 3R | 32079331 | 3R | 25044972..25045049 | 94..17 | 360 | 97.4 | Minus |
| 3R | 32079331 | 3R | 25040818..25040877 | 1220..1161 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:46:27 has no hits.
BS32787.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-22 12:52:23 Download gff for
BS32787.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 5PtaseI-RB | 103..1304 | 17..1218 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:22:34 Download gff for
BS32787.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 5PtaseI-RB | 103..1304 | 17..1218 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:22:34 Download gff for
BS32787.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25043523..25043678 | 767..922 | 99 | <- | Minus |
| 3R | 25043735..25043822 | 679..766 | 100 | <- | Minus |
| 3R | 25043881..25044053 | 506..678 | 100 | <- | Minus |
| 3R | 25044110..25044289 | 326..505 | 99 | <- | Minus |
| 3R | 25044526..25044756 | 95..325 | 99 | <- | Minus |
| 3R | 25044972..25045049 | 17..94 | 97 | | Minus |
| 3R | 25040820..25040875 | 1163..1218 | 100 | <- | Minus |
| 3R | 25043226..25043465 | 923..1162 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-22 12:52:23 Download gff for
BS32787.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20866542..20866597 | 1163..1218 | 100 | <- | Minus |
| arm_3R | 20868948..20869187 | 923..1162 | 100 | <- | Minus |
| arm_3R | 20869245..20869400 | 767..922 | 99 | <- | Minus |
| arm_3R | 20869457..20869544 | 679..766 | 100 | <- | Minus |
| arm_3R | 20869603..20869775 | 506..678 | 100 | <- | Minus |
| arm_3R | 20869832..20870011 | 326..505 | 99 | <- | Minus |
| arm_3R | 20870248..20870478 | 95..325 | 99 | <- | Minus |
| arm_3R | 20870694..20870771 | 17..94 | 97 | | Minus |
BS32787.pep Sequence
Translation from 16 to 1218
> BS32787.pep
MESAQEDASSTDVFLVTANVGSLFEDPERLLQLWLSEFLAKIAVAQPRFL
ALHLQEVGGKTYEKSMEYVQEFIRCLCDAPEMGDFTCVHIFMDEDFKSAE
HFTALGSLYFVHKDVASLKIWNFLTHSWEESLQDVKDKHIYSGNIETIAT
KEKSKFPQHFFPECKWSRKGFMRTRWEINGTVIDLVNIHLFHDASNLAAC
ENFPSVYCKTRRRALVHTIERFHLDEQNGTVPFFLFGDFNFRCDTEGVVK
ELTENLTPHRVQNVKNENDKIHYRNSTGNNVLTVGKKEFSHADHQLKFKE
DWLKKFDRELEPLKDVLVEYPIKFVPSYPFEEDPEMPTDYMSTRCPAWCD
RILMSPQVNEIIQSDDWTYGMIGEAVCMGDHKVLRIPQLYRSYRRAWRTW
*
BS32787.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:51:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 5PtaseI-PB | 400 | CG31110-PA | 1..400 | 1..400 | 2172 | 100 | Plus |
| 5PtaseI-PC | 699 | CG42283-PC | 1..382 | 1..382 | 2070 | 100 | Plus |
| 5PtaseI-PF | 786 | CG42283-PF | 1..382 | 1..382 | 2070 | 100 | Plus |
