BS32788.complete Sequence
2360 bp assembled on 2014-03-03
GenBank Submission: KX800236
> BS32788.complete
GAAGTTATCAGTCGACATGGCACAAACGAGCTCCATGAAGTTGCTGGGCG
CCCGCAACATGTCCTGCATTGTGGAGCGTATGGAGTGGAACAACAAGATG
GATCTAATTGCCTACGGAACGGAAAAGGGTGAGGTGGTCATCCAGCGTCT
GAACTGGCAAAAGATTGTCACCTTTCCCACGCCCGGCGAGGATGTGCGGG
TGCGTTCGCTCAGCTGGCAAATGGACGAGACACTCCTGGCGGTTGGCTAC
AGCAACGGCAAGGTGGCGCTCCTGGACGCCGAGAGCGGAACGATAATATC
AGGCCTCATTTACGAGGACGACATCAAGAAGGTCTACTTCAGCAAGGCCA
TCAACTCGCAGGAGAACCTAGGAACTTACACATGTAATGTCAAGGATAAA
CACCGAAGGTTCCTGCCCAAACTGCAGCCAATGACCAATATTGATCCGTG
CCTGAAAACCCTGGACCAAAAGTCCTTTCCAAAGGGATCACCTTGCTTTC
TGGTGGTGATAATGCGCAGCGGCAAAGTGCACCTACTGCTCCTAGGAGCC
CTGCAGGCGGGCAGCATCGATCTCACACAGCACATTCTGCATCCGCACGA
GTTCGATGTGTACGATGTGAGGATGAACGGAGACTGTAATGCCATTTATG
CTCTTTTGCGGGACGGTCAGGAGCTGATATTGCTGCACTTTCAAAACCAG
GTGCTGCAGGATTGCATGGCACCCATGCTGGAGCTGGCAACGCATTGTGC
CCACATCCTAGAAACCAAAAACTATATTAATGACACGCAACAATGTTTGA
CGGAGGCCTGGGAGACCGTGCAGTTGGAAATGGACAATAAGCTAACCAGG
TACGCCAATTCCCAGCCGTACGGAGTGATATCTGCCCATTTTCTGGAGCT
GCACGTCTTTGGATTCGCTACCTTCGAGGTAGAGGAGTTTTTGTTCGAGA
CTCTTTCCGAGAAGGGTTTCAAGAAGATTGCCAACTCGGTGGACCTTAGT
TTAAGCAATCTGCAGAGCTTAGTTTTCAAGCAACTGAATGGAGCAGCCAT
CAACATGTTCTATTTCCTCAACACAATCGCGGGTTTCGGTCGCATGTCGC
ACTTTTTTGAGTCCCTAATCTCTCCGGATGTGGCCAACGAAGCGATGCGA
GCCTGTGGAGGATTTGTGCTCAAAGTACACGAGCTGCAGCGAACAATCGA
CACGTTGGCGTACGACATGAAGCTCTTTCACGCCTGGATGATATTCACAA
TACTACGGCTGTCGCATCAGGAGATTCCCGATGACCTGGTGCTCACCGAG
GAGGAGAACATTGCCATGGCCGACTTCATCTGCGCCATGGAACCGGAATT
GGACGATCGCAGCGATGATGAGGATGAACTGGATTCGCAATCCCAAACGC
CACCGCCTGCGCGCAGCAAATTCAATTTGGAACGAGTGGGCCAGTATCTG
GACAATGCCTACCTCACACAGCTCTATCCCAGGGATCCAGTCCAGCTGTG
GGAGGAGATGGTAACCGACAACGAATGCCTAAGCAACTGCAAACTTTTTG
TGCCCCACGACGTGAACCTGTCGCTTGTGCAGCAGCGCGACAAGATGTTC
AATGCCATCGATGCCGTGTTCCATAAGCCAACGGAGAGCATAAGCGGAAG
TTTCAAGGTCTCCTCGACGGTGATATGCAACGACCTGCCGCCCATGGAGC
CCGGCGAGGACCATAGGGACAGGGATCTCGTCACCTGCACCTATTACGTT
AACGAAGCGTCCAGGACCGACATGTTGGCCTGCACCATCAGCGGGCAGGA
GGCCATGATACTCGAGTTTAGTCGAGCGGGCGATGAATGCGTGCGCTGCA
CTAGAATTACACTGGAGCCAGGATTATTTACAACATCCGTGTCCGAAGAT
TTCTGTTACCTACGCTTCGTCGACCTGCAGTTCTACAATGAATCTTCGCT
ATCGATACTGGCCCAGTCCATAAATGCGGGACCTGGCATGCGACCGCATA
GCTTCTTTATACAATTCTCACTGACCGCGGCGCTGAATTACAGCACACAG
CACCGAATGGGACCGTTGGTCAAGCTGAGCGAAGCCACCGTGTCGCAAAG
CATCCATGACATTGCCGATGGTGCCGCCTTCAAGGGACTGGACGGATTTA
GCGACATGTTGGCCGTCTCGGGCAGCAGGAAGGTGGCCACCGTTCTCTCC
GATCGCAAGCGCAAGATGACCATTTTTGAGATGGAAATCGAGGAGGAGGA
GGATGACACGGAAATGTCCCAGGCCTCGTTTCTGGACATCAGCAAAGAGT
CTGTGCTGGCTGGCGTTCCCGATGCGGAGAAACAGGAGGCGTAGAAGCTT
TCTAGACCAT
BS32788.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 15:03:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| APC4-RA | 2328 | CG32707-PA | 1..2328 | 17..2344 | 11625 | 100 | Plus |
| APC4-RC | 2322 | CG32707-PC | 1..2322 | 17..2344 | 11500 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:03:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| APC4-RA | 2617 | CG32707-RA | 124..2451 | 17..2344 | 11625 | 100 | Plus |
| APC4-RC | 2605 | CG32707-RC | 118..2439 | 17..2344 | 11500 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 15:03:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9084467..9085701 | 1110..2344 | 6160 | 99.9 | Plus |
| X | 23542271 | X | 9083538..9083941 | 368..771 | 2020 | 100 | Plus |
| X | 23542271 | X | 9083240..9083484 | 128..372 | 1225 | 100 | Plus |
| X | 23542271 | X | 9083999..9084176 | 772..949 | 890 | 100 | Plus |
| X | 23542271 | X | 9084237..9084399 | 949..1111 | 815 | 100 | Plus |
| X | 23542271 | X | 9083054..9083170 | 17..133 | 585 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 15:03:17 has no hits.
BS32788.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-03-03 17:25:31 Download gff for
BS32788.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| APC4-RA | 124..2451 | 17..2344 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:30:18 Download gff for
BS32788.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| APC4-RA | 124..2451 | 17..2344 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:30:18 Download gff for
BS32788.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9083054..9083165 | 17..128 | 100 | -> | Plus |
| X | 9083241..9083483 | 129..371 | 100 | -> | Plus |
| X | 9083542..9083941 | 372..771 | 100 | -> | Plus |
| X | 9083999..9084175 | 772..948 | 100 | -> | Plus |
| X | 9084237..9084399 | 949..1111 | 100 | -> | Plus |
| X | 9084469..9085701 | 1112..2344 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-03-03 17:25:31 Download gff for
BS32788.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8977087..8977198 | 17..128 | 100 | -> | Plus |
| arm_X | 8977274..8977516 | 129..371 | 100 | -> | Plus |
| arm_X | 8977575..8977974 | 372..771 | 100 | -> | Plus |
| arm_X | 8978032..8978208 | 772..948 | 100 | -> | Plus |
| arm_X | 8978270..8978432 | 949..1111 | 100 | -> | Plus |
| arm_X | 8978502..8979734 | 1112..2344 | 99 | | Plus |
BS32788.pep Sequence
Translation from 16 to 2343
> BS32788.pep
MAQTSSMKLLGARNMSCIVERMEWNNKMDLIAYGTEKGEVVIQRLNWQKI
VTFPTPGEDVRVRSLSWQMDETLLAVGYSNGKVALLDAESGTIISGLIYE
DDIKKVYFSKAINSQENLGTYTCNVKDKHRRFLPKLQPMTNIDPCLKTLD
QKSFPKGSPCFLVVIMRSGKVHLLLLGALQAGSIDLTQHILHPHEFDVYD
VRMNGDCNAIYALLRDGQELILLHFQNQVLQDCMAPMLELATHCAHILET
KNYINDTQQCLTEAWETVQLEMDNKLTRYANSQPYGVISAHFLELHVFGF
ATFEVEEFLFETLSEKGFKKIANSVDLSLSNLQSLVFKQLNGAAINMFYF
LNTIAGFGRMSHFFESLISPDVANEAMRACGGFVLKVHELQRTIDTLAYD
MKLFHAWMIFTILRLSHQEIPDDLVLTEEENIAMADFICAMEPELDDRSD
DEDELDSQSQTPPPARSKFNLERVGQYLDNAYLTQLYPRDPVQLWEEMVT
DNECLSNCKLFVPHDVNLSLVQQRDKMFNAIDAVFHKPTESISGSFKVSS
TVICNDLPPMEPGEDHRDRDLVTCTYYVNEASRTDMLACTISGQEAMILE
FSRAGDECVRCTRITLEPGLFTTSVSEDFCYLRFVDLQFYNESSLSILAQ
SINAGPGMRPHSFFIQFSLTAALNYSTQHRMGPLVKLSEATVSQSIHDIA
DGAAFKGLDGFSDMLAVSGSRKVATVLSDRKRKMTIFEMEIEEEEDDTEM
SQASFLDISKESVLAGVPDAEKQEA*
BS32788.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 10:02:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| APC4-PA | 775 | CG32707-PA | 1..775 | 1..775 | 4020 | 100 | Plus |
| APC4-PC | 773 | CG32707-PC | 1..773 | 1..775 | 3996 | 99.7 | Plus |
