BS32792.complete Sequence
4163 bp assembled on 2014-03-03
GenBank Submission: KX804182
> BS32792.complete
GAAGTTATCAGTCGACATGTGCGAGCGAAACAACAACAAACAAGTTACAA
GCTCCAACAAAATTCCGTCTTCATTCAATGCGAAACTGGAGCTAGACTCC
AGCAAAGACGACACCATTCACTCCACAAGCTTGAACAAGAAGCTGGTCAA
GATTAAAAAGTTCAAGTTGGACGATATGAAGGAGATGGTGGGCGGCTGTT
GCGTTTGTTCAGACGAGCGGGGGTGGCCGGAGAACCCGCTCGTCTACTGT
GACGGCCAGAACTGTACTGTGGCAGTGCACCAGGCGTGCTATGGCATTGT
GACGGTTCCCACTGGACCCTGGTACTGTCGCAAGTGCGAGTCCCAGGAGC
GAACCTCTCGCGTCCGATGCGAACTATGTCCCTCGCGGGATGGCGCCCTT
AAGAAGACGGATAATAGCGGGTGGGCGCACGTTGTTTGCGCCCTGTACAT
CCCAGAGGTGCGATTTGGGAATGTGACCACCATGGAGCCCATCATATTGT
CATTAATACCGCAGGAGCGGTACTCGAAGACTTGCTATATTTGCCAGGAA
ATTGGCAAACCAAATCGTGCCAATGTTGGCGCCTGTATGCAGTGCAACAA
ATCGAATTGCAAGCAGCAGTTCCACGTCACCTGCGCCCAGAGCCTTGGAT
TGCTCTGCGAGGAGGCTGGTAACTATCTGGATAATGTGAAGTACTGCGGC
TACTGTCAGCACCATTACAGCAAACTGAAAAAGGGCGGCAACGTCAAAAC
AATACCTCCATATAAACCCATTCAACATGACACCTCTTCCGATTCGTGTT
CGTCGCCCGAGAAGGAGATCGATTCAACCATGAACTCCGCGACAACTTCG
GCCACAATCATAAAGATTACCAGCAGCAGTGGCAGTGCTGGTGGCAGCAG
CAATGTTTTGAATGCAAGCTCCAGTGCTGGAATCTCTGCTGGAAGCAGCA
GTGGGAGTGGCGTATCATCTTCCGCAAAGCAGCGCAAGAGCAATGCATCA
AGTAAATCATCTAGCAGCAGTAGCAGTAGCTCGTCATCCTCAACAGGAGG
GGCTCCCAACCCCTCCTCGAGTTCTGTGCATTCGGGAAGTGCTAGCAATA
TGACAGGAGGAGGAAGTGTACTACCAGGGAGTAGCAACATCGGCAACATT
AGCAATAGTTTAAACAATAATCTGCCCGGAGGCAGTTCGTCCACCAGCAG
TGCTGGAAACGTGCCTGGTGGAAGTGGGGGAATTATATCAGCTTCGAGCG
GTGGTGCTACGCAATCGACAAGCAGTCAATCGTCAACAGCACCAGGAACC
ACCAAATCATCGGCCAGCAGTTCGAGCAGTAGTAGCAACAGCTACAAGGA
GAAACATAGCAAAAGCTTAAGCAAATCCACATCCAGCAAGGACAAGGATG
GAAAAGATAGCTCTACCAATTCAGCGAATAACAATTTCACAAATTCATCT
GCATCATCAACATCTTCCAACTCCTCGTCGACACGAGAGAAATCCTCATC
AAAGCTTTCTAAGAACAAAGACTCCAATCAAGTACCCAGTGCCACCAGCA
GCTTAAGCACAACGAGCAGTATCAACACCCAGCCCAGTTCGTCGACTTCA
ACTGCTACAGCTGGATCGGGCGGTACTGGGACTCATGTGAGCAGTTCGGC
TGCCAGTGGACTTAACTCAGCTCCTTCCACAACCAATGAGCATTCAAATC
ATGCCCACACCCTTAGCACAAATGGAACCGGAGCCGGAAGCGCAGCCGGA
AAGTTGCAATCAGTCAGTAATCTGAGCAACAGTAGTTCTGGTTTTGGATC
GGATCTGCGATCAGTCAGCACATCCTCAAGCTCCACTGTGAACGACTCCA
CCGGAGGATTCGGTAGTAATTCGAATTCAGAAAGGGAGAATTTGTCAGGC
GCTGGATCGTCGGCAAGCAACATGCCTGGAACAATAGCTCCTGGTACTGG
TGGCGTATCTTCCAGTGCGGCCACTAATCTAAGCACCAATAAGGGAGGCT
CTTCGTCATCGACGGCGAATAGCCTTACATCTACGAGCACTTCCTCAGGC
AGCTCCTCTAACTCGTCATCGAAAAAACGAAAAGCGGATTCTGCTAAGTC
CACTAGCAGTATTTCCACCTCTGGCTCCGCTCTGGAGGATAACAATAGCT
TAATATCCCGCTATGATATCAAAGATGTTCAAGTTGCACTGACGCCTCTA
ACAGATTTTGAGAAGGAAATCGAGAAGAGCTCCAAGAGGCAACGTACCGA
ACTCAGCCCGCCGACCCACCAAACATCCGCAACCGCCGAAGTAAATGCAC
CGCTGGCCAGCTCGACGAGTGCATCCATTGCGGTAACTGCGAGTGCGACG
GCGGCATCAGCCCCTCCAGCAACGGGCACCACTACCTTAGGCAGCAGCAT
TAGCGGCAATGCTGGCTCAACCTCCAGCGGTAACAGTTCCGGAGTATCGG
CGACTGGAGGAGCACAATCCGCCGTGGGGTCTGGCGGCTATCCAAAGACA
GAATCGAGCAAGTCGAGTGGCACCGCAAGCGCAGGCAGTGGCAGTGGCAG
CAGCAGCAATACAAGTAGCACCAAGCACGGCAGCAACATCAAGGATATTA
GCAGCAGTAGCAATCAGCAGGCATCGACTGCGAGCAGCAGTAGTGCACCC
AGCCTTTATGTCTCCGTGCCACTGTCCACGGCCAACGTACCTGGAATCAA
TCTGCCCACCAGCAGCACTAGCAGTAGTACCACCAGCGAATCCCATTCGG
CATCGTCGCGCAGCAGTGGTGCACAATCTCAGCATCAGCAGCAGCTAAGC
AATGCTTTGGTTGGTCCGCCCATGGGAGGATCCGCTGGGGCTTTTCATGG
CGGAACAACCAGCGCTGGGTCCTCGTCGGTCATCCAGCAGCAGAGCGGCA
AGTCATCGCCGGCTCTGGGCACGCTAGTCAGTGGCAACAGTGGTGGTAGC
ATAATCTCCGCCAGTGGCTTTCCACTACCGAGTGGTAATCTCACTGCCAC
GACCACTGAGAGCGGCAACTTGAAGATCAGCTATGAGAAACAGACGACAC
GAGTGCAACAATTGCAGGAGCAGGAGGCGCCACCGGCCAGACGCAGCAGA
ACGCTTGATCTGAGCACGGCAAGCGCTTCATCGTCATCGCCATCTGCAGT
GCCCGCGACAACATCTCCCTTGGTCGTACTGAGTAACCAATTGCCACTTA
ACTCGGTGGCAGCAAGTAGTTCCACCGGTGGTCTGAAGTTTACCTACGAG
AGTCAGACCCAGATGGACGTGCCCATGATGCCTGTGAGCGCCATAAAGGA
TTCCCCGCCCAGTTCGCCCGGCTCAGAGATAGGATCGGCCATGCACTCCG
CAACTACTGCACCCGGTTCCCTGACTGGAGCTTCGACAGCGGCGACTGCT
CAACCTGGAAATGTACGGAAGCGTGGACGCAAGGCCAAAGATGCGACGAT
AGCTGCTGCAGCGGCGGCAGCGGCAGCAGCAGCTGCTCTCAGCAATTCTC
AACAGGATCTCAAGGATGTGCGCATACTCCAGAATGGGGCGAGCAATACA
CCGGGCAATCCAGCTGGCAGCACACCAACGCCTCCTGCTACTCCCGCTTC
GTCTAATGCTGTCAGCTCAGCCAGTTCGATCATTACACACACGGCCGCGC
ATATGCTGGGCAACCAGATCAACCCAAACAGCAGCGTGGCCCAGAAGCTG
TCCGAGCAGCTGCACATGGAGGTCCAGGATCACTCGATCTACACTCCCGA
TTCAATGAACTCGCAATACGCCGGAGTTCCGTTCCCCGGCAAGCAGCGTA
ACTCCACTGCCGTTCCTAGCAACGCCACGCCAGCTCAAAATCCGCTGCAA
TCGATGTTCAGCGGTGGCGGCATGAACGGCAACATGCCCATTCCGCAAAG
TCTGGAGCAGCTGCTGGAGCGCCAGTGGGAGCAGGGCTCGCAGTTTCTCA
TGGAGCAAGCGCAGCACTTTGACATTGCCTCGCTGCTTAATTGCTTGCAC
CAGCTGCAGAGCGAAAACCTCCGGCTGGAGGAGCATGTGACCAGCCTGAT
AGCGCGACGTGATCACCTGCTGGCGGTCAATGCGCGCCTGCAGATCCCGC
TGAGTACCATCGCAAGCAACACCAAGGCCGAGGCGCATGGTAAGTAAAAG
CTTTCTAGACCAT
BS32792.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 15:03:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Alh-RA | 4131 | CG1070-PA | 1..4131 | 17..4147 | 20655 | 100 | Plus |
| Alh-RD | 3972 | CG1070-PD | 1..3972 | 176..4147 | 19860 | 100 | Plus |
| Alh-RP | 5154 | CG1070-PP | 1..3088 | 17..3104 | 15425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:03:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Alh-RA | 5006 | CG1070-RA | 248..4378 | 17..4147 | 20655 | 100 | Plus |
| Alh-RD | 4823 | CG1070-RD | 99..4195 | 51..4147 | 20485 | 100 | Plus |
| Alh-RP | 6029 | CG1070-RP | 248..3335 | 17..3104 | 15425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 15:03:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7119462..7120883 | 2148..727 | 7110 | 100 | Minus |
| 3R | 32079331 | 3R | 7098826..7099525 | 3796..3097 | 3500 | 100 | Minus |
| 3R | 32079331 | 3R | 7101599..7102098 | 2738..2239 | 2500 | 100 | Minus |
| 3R | 32079331 | 3R | 7121275..7121755 | 530..50 | 2405 | 100 | Minus |
| 3R | 32079331 | 3R | 7101137..7101498 | 3099..2738 | 1810 | 100 | Minus |
| 3R | 32079331 | 3R | 7120942..7121138 | 727..531 | 985 | 100 | Minus |
| 3R | 32079331 | 3R | 7098555..7098735 | 3974..3794 | 905 | 100 | Minus |
| 3R | 32079331 | 3R | 7098311..7098483 | 4147..3975 | 865 | 100 | Minus |
| 3R | 32079331 | 3R | 7118958..7119051 | 2239..2146 | 470 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 15:03:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-A | 13424 | TART-A 13424bp | 11095..11126 | 871..902 | 124 | 87.5 | Plus |
BS32792.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-03-03 17:25:34 Download gff for
BS32792.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Alh-RA | 248..4376 | 17..4145 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:30:21 Download gff for
BS32792.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Alh-RA | 248..4376 | 17..4145 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:30:21 Download gff for
BS32792.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7098313..7098483 | 3975..4145 | 100 | <- | Minus |
| 3R | 7098555..7098732 | 3797..3974 | 100 | <- | Minus |
| 3R | 7098826..7099522 | 3100..3796 | 100 | <- | Minus |
| 3R | 7101137..7101497 | 2739..3099 | 100 | <- | Minus |
| 3R | 7101599..7102097 | 2240..2738 | 100 | <- | Minus |
| 3R | 7118958..7119048 | 2149..2239 | 100 | <- | Minus |
| 3R | 7119462..7120882 | 728..2148 | 100 | <- | Minus |
| 3R | 7120942..7121138 | 531..727 | 100 | <- | Minus |
| 3R | 7121275..7121753 | 52..530 | 100 | <- | Minus |
| 3R | 7123904..7123938 | 17..51 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-03-03 17:25:34 Download gff for
BS32792.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2924035..2924205 | 3975..4145 | 100 | <- | Minus |
| arm_3R | 2924277..2924454 | 3797..3974 | 100 | <- | Minus |
| arm_3R | 2924548..2925244 | 3100..3796 | 100 | <- | Minus |
| arm_3R | 2926859..2927219 | 2739..3099 | 100 | <- | Minus |
| arm_3R | 2927321..2927819 | 2240..2738 | 100 | <- | Minus |
| arm_3R | 2944680..2944770 | 2149..2239 | 100 | <- | Minus |
| arm_3R | 2945184..2946604 | 728..2148 | 100 | <- | Minus |
| arm_3R | 2946664..2946860 | 531..727 | 100 | <- | Minus |
| arm_3R | 2946997..2947475 | 52..530 | 100 | <- | Minus |
| arm_3R | 2949626..2949660 | 17..51 | 100 | | Minus |
BS32792.pep Sequence
Translation from 16 to 4146
> BS32792.pep
MCERNNNKQVTSSNKIPSSFNAKLELDSSKDDTIHSTSLNKKLVKIKKFK
LDDMKEMVGGCCVCSDERGWPENPLVYCDGQNCTVAVHQACYGIVTVPTG
PWYCRKCESQERTSRVRCELCPSRDGALKKTDNSGWAHVVCALYIPEVRF
GNVTTMEPIILSLIPQERYSKTCYICQEIGKPNRANVGACMQCNKSNCKQ
QFHVTCAQSLGLLCEEAGNYLDNVKYCGYCQHHYSKLKKGGNVKTIPPYK
PIQHDTSSDSCSSPEKEIDSTMNSATTSATIIKITSSSGSAGGSSNVLNA
SSSAGISAGSSSGSGVSSSAKQRKSNASSKSSSSSSSSSSSSTGGAPNPS
SSSVHSGSASNMTGGGSVLPGSSNIGNISNSLNNNLPGGSSSTSSAGNVP
GGSGGIISASSGGATQSTSSQSSTAPGTTKSSASSSSSSSNSYKEKHSKS
LSKSTSSKDKDGKDSSTNSANNNFTNSSASSTSSNSSSTREKSSSKLSKN
KDSNQVPSATSSLSTTSSINTQPSSSTSTATAGSGGTGTHVSSSAASGLN
SAPSTTNEHSNHAHTLSTNGTGAGSAAGKLQSVSNLSNSSSGFGSDLRSV
STSSSSTVNDSTGGFGSNSNSERENLSGAGSSASNMPGTIAPGTGGVSSS
AATNLSTNKGGSSSSTANSLTSTSTSSGSSSNSSSKKRKADSAKSTSSIS
TSGSALEDNNSLISRYDIKDVQVALTPLTDFEKEIEKSSKRQRTELSPPT
HQTSATAEVNAPLASSTSASIAVTASATAASAPPATGTTTLGSSISGNAG
STSSGNSSGVSATGGAQSAVGSGGYPKTESSKSSGTASAGSGSGSSSNTS
STKHGSNIKDISSSSNQQASTASSSSAPSLYVSVPLSTANVPGINLPTSS
TSSSTTSESHSASSRSSGAQSQHQQQLSNALVGPPMGGSAGAFHGGTTSA
GSSSVIQQQSGKSSPALGTLVSGNSGGSIISASGFPLPSGNLTATTTESG
NLKISYEKQTTRVQQLQEQEAPPARRSRTLDLSTASASSSSPSAVPATTS
PLVVLSNQLPLNSVAASSSTGGLKFTYESQTQMDVPMMPVSAIKDSPPSS
PGSEIGSAMHSATTAPGSLTGASTAATAQPGNVRKRGRKAKDATIAAAAA
AAAAAAALSNSQQDLKDVRILQNGASNTPGNPAGSTPTPPATPASSNAVS
SASSIITHTAAHMLGNQINPNSSVAQKLSEQLHMEVQDHSIYTPDSMNSQ
YAGVPFPGKQRNSTAVPSNATPAQNPLQSMFSGGGMNGNMPIPQSLEQLL
ERQWEQGSQFLMEQAQHFDIASLLNCLHQLQSENLRLEEHVTSLIARRDH
LLAVNARLQIPLSTIASNTKAEAHGK*
BS32792.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 10:02:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Alh-PA | 1376 | CG1070-PA | 1..1376 | 1..1376 | 6890 | 100 | Plus |
| Alh-PK | 1385 | CG1070-PK | 1..1385 | 1..1376 | 6870 | 99.4 | Plus |
| Alh-PD | 1323 | CG1070-PD | 1..1323 | 54..1376 | 6622 | 100 | Plus |
| Alh-PL | 1332 | CG1070-PL | 1..1332 | 54..1376 | 6602 | 99.3 | Plus |
| Alh-PP | 1717 | CG1070-PP | 1..1307 | 1..1252 | 5178 | 81.8 | Plus |
