BS32886.complete Sequence
1550 bp assembled on 2014-01-22
GenBank Submission: KX805914
> BS32886.complete
GAAGTTATCAGTCGACATGCCCGATTCGATGATGGACATGGAGCATCGGG
ACCACCAGCTGCACCGCCAACAGCAGCAGTCGCACCACCATCAGCCTCCC
CGTCTGACGGCCAGCACCAGCACATTTGCGCCACCCGCCCCGGCGGGGAG
TCAGTCGGAGGAACGGGATCGTGATCGGGACAGGGAACGGGACCACCACC
TGCACCACCATCAGTCCAATAATGTGGCCTCATCACCACTGCCAGTGACT
GCCTCCATACAGTTGCACCAACAGCAGCCACAGCAACAACAGCAGCAGCA
ACCACTGACGCAGTTGCAGCAACCACAGTTAAGGGAACGCGAACACCACC
AACAGCAGCAGCAGCAGCAGCAGCAGATGATGCAGCAACCACAGCAGCAG
CAGCAGATGCAGCAGCCGCAGCAGCAACTGCCACACAGCCATCATGCCCT
AATGCAGCAATCGCAACAGCAGCAGGCCATCCATCGAGCCGAGGCGCGAA
GAGCGGACGAGGAAATCAGCGATAAGGCATCAACATGCGGAAAATTGCTA
ATATTTCTTTCCGTGGCTCTTGTGATAATGACGCTACCCTTCAGTCTCTT
TGTTTGCTTTAAGGTGGTGCAGGAGTACGAGCGCGCGGTTATCTTCCGTT
TGGGTCGTCTTATGCAGGGCGGTGCCAAGGGCCCAGGTATCTTCTTCATC
CTGCCCTGCATTGACTCCTATGCCCGTGTGGACTTGCGTACTCGCACATA
CGATGTGCCACCGCAGGAGGTTCTCACAAAGGATAGCGTTACGGTTTCGG
TGGATGCAGTGGTTTACTATCGGGTATCAAATGCGACCGTCTCTATCGCG
AACGTGGAGAATGCTCACCATTCGACCAGGCTACTGGCACAGACTACTCT
ACGGAACACAATGGGAACTCGGCATTTGCATGAGATACTCAGCGAGCGTA
TGACGATTTCCGGCACAATGCAGGTTCAACTCGACGAAGCCACCGATGCC
TGGGGCATCAAAGTTGAACGTGTGGAAATCAAGGACGTGCGTCTGCCGGT
GCAACTGCAACGTGCCATGGCCGCGGAGGCAGAAGCCGCCCGGGAAGCCC
GCGCCAAAGTCATCGCCGCCGAAGGAGAACAGAAGGCGTCGAGGGCTCTT
CGCGAGGCGTCCGAGGTGATTGGCGATTCGCCGGCTGCCCTCCAACTGCG
CTACCTTCAGACACTCAACACCATATCTGCGGAGAAGAACTCGACGATTG
TGTTCCCGCTGCCCATCGATTTAATAACATATTTCCTGAAGACCAACGAG
GCCACAACGCAGCAAAATGCCCGAGCAGCTGCGGCAGCAATTGGCAACAC
ACCGCCGCCATTGCAACTGGCGCCGCAGCAGCAGATGGGGCAGCAGCAAC
AGCCGCAGTACCAACAGCCGCAGCAGCAGCAGCAGCAGTACCAACCGCAG
CAGCAACAACAGCAGCAGCAGCAACAGCCGCAGCAGCAAGATCAACTCTA
TCAACAGGGGCAGCAGATCTCATCAGCCATGTAAAAGCTTTCTAGACCAT
BS32886.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:47:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42540-RD | 1518 | CG42540-PD | 1..1518 | 17..1534 | 7575 | 99.9 | Plus |
| CG42540-RJ | 1506 | CG42540-PJ | 475..1506 | 503..1534 | 5145 | 99.9 | Plus |
| CG42540-RC | 1194 | CG42540-PC | 163..1194 | 503..1534 | 5145 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:47:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42540-RD | 3766 | CG42540-RD | 309..1827 | 17..1535 | 7580 | 99.9 | Plus |
| CG42540-RJ | 4175 | CG42540-RJ | 1204..2236 | 503..1535 | 5150 | 99.9 | Plus |
| CG42540-RC | 3863 | CG42540-RC | 892..1924 | 503..1535 | 5150 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:47:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4575272..4575758 | 17..503 | 2435 | 100 | Plus |
| 3L | 28110227 | 3L | 4590026..4590356 | 1205..1535 | 1655 | 100 | Plus |
| 3L | 28110227 | 3L | 4586578..4586785 | 768..975 | 1025 | 99.5 | Plus |
| 3L | 28110227 | 3L | 4589787..4589967 | 1030..1210 | 905 | 100 | Plus |
| 3L | 28110227 | 3L | 4578758..4578871 | 502..615 | 570 | 100 | Plus |
| 3L | 28110227 | 3L | 4580074..4580161 | 684..771 | 440 | 100 | Plus |
| 3L | 28110227 | 3L | 4579445..4579521 | 612..688 | 385 | 100 | Plus |
| 3L | 28110227 | 3L | 4588066..4588124 | 971..1029 | 295 | 100 | Plus |
| X | 23542271 | X | 19186315..19186413 | 1067..1165 | 210 | 80.8 | Plus |
Blast to na_te.dros performed 2014-11-28 14:47:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6853 | 340..475 | 304 | 70.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2725..2986 | 227..474 | 295 | 61.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2428 | 353..474 | 286 | 70.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6879 | 317..474 | 286 | 67.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6747..7195 | 42..491 | 254 | 55.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6768..7197 | 42..474 | 247 | 54 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2625..2887 | 266..535 | 236 | 60.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2673 | 53..404 | 233 | 55.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6904 | 382..553 | 224 | 65.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2300..2654 | 30..376 | 189 | 55 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6814..7222 | 40..429 | 161 | 57.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1046..1144 | 374..475 | 160 | 66 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3219..3302 | 392..475 | 141 | 63.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1485..1590 | 370..479 | 134 | 61.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2225..2374 | 321..474 | 130 | 58.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2786..2879 | 49..146 | 121 | 61.6 | Plus |
| Dvir\Tel | 2485 | Dvir\Tel 2485bp Derived from AF009439 (Rel. 66, Last updated, Version 3). | 1502..1565 | 1279..1216 | 121 | 69.2 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1061..1122 | 410..474 | 119 | 71.2 | Plus |
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 514..661 | 1158..1006 | 114 | 54.9 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1090..1162 | 34..106 | 113 | 61.6 | Plus |
BS32886.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-22 12:52:35 Download gff for
BS32886.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42540-RD | 309..1824 | 17..1532 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:22:51 Download gff for
BS32886.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42540-RD | 309..1824 | 17..1532 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:22:51 Download gff for
BS32886.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4589787..4589967 | 1030..1210 | 100 | -> | Plus |
| 3L | 4575272..4575758 | 17..503 | 100 | -> | Plus |
| 3L | 4578760..4578869 | 504..613 | 100 | -> | Plus |
| 3L | 4579447..4579519 | 614..686 | 100 | -> | Plus |
| 3L | 4580077..4580159 | 687..769 | 100 | -> | Plus |
| 3L | 4586580..4586783 | 770..973 | 99 | -> | Plus |
| 3L | 4588069..4588124 | 974..1029 | 100 | -> | Plus |
| 3L | 4590032..4590353 | 1211..1532 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-22 12:52:35 Download gff for
BS32886.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4589787..4589967 | 1030..1210 | 100 | -> | Plus |
| arm_3L | 4575272..4575758 | 17..503 | 100 | -> | Plus |
| arm_3L | 4578760..4578869 | 504..613 | 100 | -> | Plus |
| arm_3L | 4579447..4579519 | 614..686 | 100 | -> | Plus |
| arm_3L | 4580077..4580159 | 687..769 | 100 | -> | Plus |
| arm_3L | 4586580..4586783 | 770..973 | 99 | -> | Plus |
| arm_3L | 4588069..4588124 | 974..1029 | 100 | -> | Plus |
| arm_3L | 4590032..4590353 | 1211..1532 | 100 | | Plus |
BS32886.pep Sequence
Translation from 16 to 1533
> BS32886.pep
MPDSMMDMEHRDHQLHRQQQQSHHHQPPRLTASTSTFAPPAPAGSQSEER
DRDRDRERDHHLHHHQSNNVASSPLPVTASIQLHQQQPQQQQQQQPLTQL
QQPQLREREHHQQQQQQQQQMMQQPQQQQQMQQPQQQLPHSHHALMQQSQ
QQQAIHRAEARRADEEISDKASTCGKLLIFLSVALVIMTLPFSLFVCFKV
VQEYERAVIFRLGRLMQGGAKGPGIFFILPCIDSYARVDLRTRTYDVPPQ
EVLTKDSVTVSVDAVVYYRVSNATVSIANVENAHHSTRLLAQTTLRNTMG
TRHLHEILSERMTISGTMQVQLDEATDAWGIKVERVEIKDVRLPVQLQRA
MAAEAEAAREARAKVIAAEGEQKASRALREASEVIGDSPAALQLRYLQTL
NTISAEKNSTIVFPLPIDLITYFLKTNEATTQQNARAAAAAIGNTPPPLQ
LAPQQQMGQQQQPQYQQPQQQQQQYQPQQQQQQQQQQPQQQDQLYQQGQQ
ISSAM*
BS32886.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:52:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42540-PD | 505 | CG32245-PB | 1..505 | 1..505 | 2579 | 100 | Plus |
| CG42540-PG | 517 | CG42540-PG | 1..517 | 1..505 | 2553 | 97.5 | Plus |
| CG42540-PJ | 501 | CG42540-PJ | 34..501 | 44..505 | 1753 | 78.9 | Plus |
| CG42540-PF | 506 | CG42540-PF | 67..506 | 86..505 | 1739 | 82.1 | Plus |
| CG42540-PH | 393 | CG42540-PH | 37..393 | 149..505 | 1715 | 96.4 | Plus |
