BS32904.complete Sequence
2135 bp assembled on 2014-03-03
GenBank Submission: KX802908
> BS32904.complete
GAAGTTATCAGTCGACATGAGCTTTCGTTCGTCTCCGCAGGGAAAGCCAC
ACCCAATGACGGACTATCAGTCCATCCGGCCTTCCGAAGTGGAGCAGCTC
TTCGAGAAGAAGTTCCACTATCAGAAGCCGAAAGGAAACAAATCCTGGCA
GTTGCCGCCACCGGATCAGGCTCTCTTCAGTGAGTTCTACCAGTTCGAGG
CGCTGCAGGGACTGCGCGAGCAGCTGAATGCGGTTAAAAGCAAACTCAAT
GACTATGGCGTGCAGGAATGGAGTGCTCACACCAACAGGCGTGACCCTTC
TGGCGAGGTGTCCTGGCGCCTGAAAAACGACACGAAGGCCGAATTTGTAA
CTGTGGCATGGTGCAAGTTGTTCGAGTGCCTGCATCGTTATCCATTGGTC
ACGAAGCCGGCGGTCAACAGTATGCATCTCTGCGAGGCACCCGGTGCCTT
CATAGCATCTCTGAATCATTACCTTCATAGCAAATATGAAAAGGATGAGA
TTAAATGGCGCTGGCGCTCAACTACTTTGAATCCGTACTATGAAGGCAAT
GCTATAAACCAGATGATCAGCGATGACAGGTTCATCGTCCACACGCTGGA
CAACTGGTTCTTTCACAAAGATCTAACTGGAAATCTACTAGATGTGGCCA
ACATTGACCACCTGGTGGAACGTTGTGAGGTGGAGTTCCAGGGACAGGTG
GATCTTGTCACTGCCGATGGTTCCATCGATTGTGCCGCACAGCCTGATTG
CCAGGAAGAGATAGTGGTTCGCCTTTTCTTTGCTGAAGTACTCAGTGCCT
TAAGAATTCTCTCAAGTGGCGGTAACTTCCTAGTGAAGATGTTTACCCTC
TTCGAGGCTTGCAGTGTATCTCTACTTTATACACTCAATTGCATCTTTGA
GGAGGTACACATCTTTAAGCCGGCTACTTCCAAGCGGGGAAATTCGGAAG
TGTATGTTATCTGCCTGAACTACAACAAGGACCATCCCGACTTGCCTCGT
TTGCTAGAGGAGATAAAGAGCAAGCTTGCTCAGCCGAATGACACATTGGT
AATGCCACTGTTTGCCAAGTTCCAGATTCCCCACGACTTTCTCATGCAGC
ACGAGATCGCCTGCCGTATGTACATGAAGCTTCAAACGGATGCCATCGAG
GGCAGTATCTATGCCTACGAGTCCAATGATCGTCATTATCTGAGACATCT
TCATCACCTGCGCAGTCTTGTCGCGAACACCTACTACAGTCTATACAAAG
TGAAGCCATTAGAAGATAGCCTGTGCATCGTGGACAAGGAGGCCACCAGT
AAGGCTCTGGGATTCCAAGTGCCTGTCTATGGCGGTTCCTACACAGAAAG
GGAGTCCTTGAAACACGGTGACCTTCTCAAGCAGATTTACTGCTTGCGTC
GGGAATTTAATCAACTGGAGAAGTGTCTTAACAATAGAACACCGTATTCA
TACGTTAAGAACAGAACGGCACCCTTGAATCTTCACATTTCACGAGGAGC
ACCTGTTCAGAGCCTGCAAAGCAGCATGTTTGCCTCGGAACCAATACTCA
TTCTGCGCCTTCGCATCCTGGACACATTTGAACTCGACCCTGTCTGGCAG
TCTGCGCCAAAGTGCCAGTTGGAAAGCAAGACACTATGCTACCTGCCACC
AACAGAAGACGAGGCATTCCACACCGCCCAGCAGCGCTTTTTCATTGATC
TCCTGGAAGAAGTAAAGAAATTGAAGCCCGACAGCATTGTCTTCCACAAG
TTCCTGTTTCTCACCCATTACGCGGCGTCGCTGCTCTTATTTCTCATAGA
GAGCGTTTATCAGGATTGTTGTTTTAATAGCAATCAAGCGCAAACTCTCA
CGTTGAGTAAGCTAAAAGATACGGCTAACAGTGCCTTGGAACAGGTGCTG
GAACTTCTTAAGGACGAGCAGGCGGGGGCCATTCACAGCCTGCTGGACAT
TAAGGAGCTGCAGAAGAACCAGTTCAGCAAGGCGCTTATTCAGCACAACA
ACAGCATTGTAATGACCTGCTTCCGTAGCATGTTGGGCGAGGAATCATTT
CCCATGCCCGTAGCTCCGACATCCAACTCAGATGTCGGTTCCATCCAAGA
GTCGGCAGCTGTATTTTAAAAGCTTTCTAGACCAT
BS32904.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 15:03:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aft-RA | 2103 | CG5032-PA | 1..2103 | 17..2119 | 10470 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:03:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aft-RA | 2314 | CG5032-RA | 69..2171 | 17..2119 | 10470 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 15:03:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17786792..17788413 | 498..2119 | 8080 | 99.9 | Plus |
| 2R | 25286936 | 2R | 17786299..17786740 | 58..499 | 2195 | 99.8 | Plus |
| 2R | 25286936 | 2R | 17786203..17786244 | 17..58 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 15:03:35 has no hits.
BS32904.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-03-03 17:25:38 Download gff for
BS32904.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aft-RA | 69..2169 | 17..2117 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:30:25 Download gff for
BS32904.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aft-RA | 69..2169 | 17..2117 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:30:25 Download gff for
BS32904.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17786203..17786244 | 17..58 | 100 | -> | Plus |
| 2R | 17786300..17786740 | 59..499 | 99 | -> | Plus |
| 2R | 17786794..17788411 | 500..2117 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-03-03 17:25:38 Download gff for
BS32904.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13673708..13673749 | 17..58 | 100 | -> | Plus |
| arm_2R | 13673805..13674245 | 59..499 | 99 | -> | Plus |
| arm_2R | 13674299..13675916 | 500..2117 | 99 | | Plus |
BS32904.pep Sequence
Translation from 16 to 2118
> BS32904.pep
MSFRSSPQGKPHPMTDYQSIRPSEVEQLFEKKFHYQKPKGNKSWQLPPPD
QALFSEFYQFEALQGLREQLNAVKSKLNDYGVQEWSAHTNRRDPSGEVSW
RLKNDTKAEFVTVAWCKLFECLHRYPLVTKPAVNSMHLCEAPGAFIASLN
HYLHSKYEKDEIKWRWRSTTLNPYYEGNAINQMISDDRFIVHTLDNWFFH
KDLTGNLLDVANIDHLVERCEVEFQGQVDLVTADGSIDCAAQPDCQEEIV
VRLFFAEVLSALRILSSGGNFLVKMFTLFEACSVSLLYTLNCIFEEVHIF
KPATSKRGNSEVYVICLNYNKDHPDLPRLLEEIKSKLAQPNDTLVMPLFA
KFQIPHDFLMQHEIACRMYMKLQTDAIEGSIYAYESNDRHYLRHLHHLRS
LVANTYYSLYKVKPLEDSLCIVDKEATSKALGFQVPVYGGSYTERESLKH
GDLLKQIYCLRREFNQLEKCLNNRTPYSYVKNRTAPLNLHISRGAPVQSL
QSSMFASEPILILRLRILDTFELDPVWQSAPKCQLESKTLCYLPPTEDEA
FHTAQQRFFIDLLEEVKKLKPDSIVFHKFLFLTHYAASLLLFLIESVYQD
CCFNSNQAQTLTLSKLKDTANSALEQVLELLKDEQAGAIHSLLDIKELQK
NQFSKALIQHNNSIVMTCFRSMLGEESFPMPVAPTSNSDVGSIQESAAVF
*
BS32904.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 10:02:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aft-PA | 700 | CG5032-PA | 1..700 | 1..700 | 3690 | 100 | Plus |
| CG6379-PB | 788 | CG6379-PB | 269..380 | 205..316 | 186 | 35.7 | Plus |
| CG6379-PA | 788 | CG6379-PA | 269..380 | 205..316 | 186 | 35.7 | Plus |
