BS32928.complete Sequence
2861 bp assembled on 2014-07-07
GenBank Submission: KX800861
> BS32928.complete
GAAGTTATCAGTCGACATGTGGATCCCCAAGGGAAGATGGAGCGACTGGC
TTATGCCATTGGCATTTGTTGCCATTCTTGTTTCCTCGAGCCAAGCCACT
GGCTCTGCGTCCCAACCAGCTCCAATCAATAGAAATCCCCGAGGCAGCCA
CAACAGCAGTGGCATTGGCGACTCTGAGCTAAGTGCCTCAGAGCGAAGTC
GACGATTGATACCCTACATGGCCTTCTATCTGCCGGCGCCCGAGTTGCCC
ATTAATCAGCAGTATGCCACCAAGCACTCGTCGTCGGCTGGCGGAGCACA
GCTGCAGGCACCGCTGCCAGGTCCTGGAAGGATACCAGTGCCGGTGGCCT
ACATGCCGCAGCAGAAGCACCATCCCCACCACCATGGACCACCGCATCCG
CCACCAGGGCCGCATTATCAGTCGGGAGCAGGCGAGGTCTATCACTCCCT
TGCGATTGGAGGCCACCAGCATCAGCATGCGCCCCCACATCCGCCACCTG
GTCATGTCAAGGAGCAGCAGGCGATCACCAATTCGGGTGCCACGTATATT
GCATACAAGCCATTAAACCCGACGCATAAGCACAAGACAGTGCAGCATTT
TCCGCCACTACCGCCGTCGCCCAAGGAGCAAGTGCAGCAGCAGCATCCAC
AGCAGCACCACCACCTTCTGCACCACCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAACCACAGCAATACGAGATCCTATCATCGAGCTTAGTGGCATCCCA
GGCGCAGCGACAGCGGGGCAAACAATCAAAAATCAATTTAACACCATTTA
CAGCGCAGAACACATTGCCGGGACAGTTTATACCCATTATTTATACGCCA
GTGAGCAGCAGCAAACCGGGCTCCCCCGGCGATGCCATCAATTACAATAA
CATCCAAAGCAACCTGAAGCAGCCAGAAATTGTCTATAAAAATTCCCATC
AAACACAAATCGTTACGGATTATGCAGCCGGAGCGGCTGCCTCCGCCGAA
CAGCCACCACTATCGTCATCTGGCGAGGAGGTGGATGAGACGAATGGCGA
GAAGATGGTGGAGCAGCAGCAGGAGGACCATAGAGCCCAGGAGGAGGCGG
TGGAGCAGCAGCAGCAGCAGCCGCAACTACACCAGCAAGTGCAAAACAAT
CCAAGTTCCCCAGCACCACCGCAGTTTATAGACTATCTAATTGATGGGCC
AAGACAATCGCTGGAGGAAGAGCAGCAGCACTCCCAGCATGAGCGACCAT
CGGCTCATCAGCCGCCCCAGCATGCCTACATCCTGGTGACCACGACAGCT
CCACATATCGAGCATCAGCCTGCACCGCAAATGCATCCAGAGATTTCCAC
ACCGCGTCCACCGATTCTCTATAACCAACAGCCCACACTTCGATTACGTC
CCGTGCATACTTACAAGGCCACCAGGCGTCCCATTTACGTGACCACACCC
GCACCCGCAGTGTCGCCGACTTCAAGTCACACGGTAGAGATTACGCCCAA
ATTTGTTTACGTTTCCGGGAAGCCTCCTACTGGCCAAAACCCAGAGTTAC
CGCTTAGAGAACCATCTACGGTAACGCCTATTAAACTTAAGCCCGTTTAC
AAATACGCCCATGAGCGCCCTCCATTAACGCCTGCATACGTACCAGAGGA
TCAGGATCAGCTACCAGATATTCGCACCTCATCACTGGCCGAAATCCTTC
ACAAGCTTCAAGCGAGCAATCATCTTCCGCAAACCCTAACACCCGACAAC
ATCGACAACTCCATCAAAACATTGATCCGCATACTGCAAAATCTAAAGCA
AACCCAAACCATTGTGGCTAATCCTCCGCAGCATCACGACGAGCACAAGT
CCAGTGCCCAGGATTATGATTACAATACGGGCAGCGAAGAGGAACACCAT
TCTCAATCAGAGGAAGCGATTGCCAGACCCAAGGGACCAAATAAACATCC
AGGACCAAGCACTGGAAGACCTGGCATCGATTATCCGAACTATGCGGAGA
TCCCTCAAACCAGTTTTGAGTGCACCAAGCAACGCTACAAGGGATTCTTT
GGCGATCCGGAGACCAATTGCCAGGTCTGGCATTACTGTGATCTCAATGG
AGGAAAGGCTTCGTTCCTTTGCCCCAATGGAACCATATTTAGTCAGATTG
CCTTAACTTGCGATTGGTGGTTCAATGTCAAATGTTCAACAACCGCACAA
CTTTATGTGCTGAACGAACGACTTTACAAGTACATTCTGCCTTTTAATCC
AAAGTTCCCCGAGGACTACAACGGACCTATTGTGGATAAGTATCTGGCAA
TGAAATTCCAGGAAATGGAGGAGAAGATGCGCCTGGAGAAACAACGCAAG
GCGGCCCAAGAGGCACAGAAGCCCGAAGAAGCACCATCTACTCTACCTGC
GTTGCCCAAAAATCACAAGCCAGAACCGAAACATGGTAGCGGAATAAATG
CCCAGGTCTATGAGCAAAGCTCTGAGAAAAACTTGCTGATCGATGATGAG
ATAGATGATATTTCGGAGCGTGGGACCTACGATACGTACGACCAGACCGC
ACCCACAACTATAATGGCACCCACGAGCACCCAGGACACGCAGTCCTTTG
TCCTTAAACCAATCGTAGTTTCCTCCACTCCACAACCGCTGCCAGAGATT
GATTTCGAAGTTGAGCCAACAGCTCCAGGCAGCAGCGAAGAGGAGGATCA
CCTGCAAAGTCTAAGGGAAACTAAGGAAGCTGAGAAGAAAACGCGTGAAT
CCACAAAGGTGAGCGTGGAAAAGCTGGAAGTAATCGAGATCAAAACCGAT
GGAAACACCGGACAACTAATGCCCATCAAGAGCAGTAGCAAATGAAAGCT
TTCTAGACCAT
BS32928.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 15:10:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14304-RC | 2829 | CG14304-PC | 1..2829 | 17..2845 | 14130 | 100 | Plus |
| CG14304-RB | 3411 | CG14304-PB | 1721..3411 | 1155..2845 | 8440 | 99.9 | Plus |
| CG14304-RA | 3411 | CG14304-PA | 1721..3411 | 1155..2845 | 8440 | 99.9 | Plus |
| CG14304-RB | 3411 | CG14304-PB | 1..1139 | 17..1155 | 5695 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:10:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14304-RC | 3212 | CG14304-RC | 167..2995 | 17..2845 | 14130 | 100 | Plus |
| CG14304-RB | 3758 | CG14304-RB | 1851..3541 | 1155..2845 | 8440 | 99.9 | Plus |
| CG14304-RA | 3806 | CG14304-RA | 1899..3589 | 1155..2845 | 8440 | 99.9 | Plus |
| CG14304-RB | 3758 | CG14304-RB | 131..1269 | 17..1155 | 5695 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 15:10:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18594100..18594886 | 1940..1154 | 3920 | 99.9 | Minus |
| 3R | 32079331 | 3R | 18597103..18597679 | 1155..579 | 2885 | 100 | Minus |
| 3R | 32079331 | 3R | 18593018..18593573 | 2845..2290 | 2780 | 100 | Minus |
| 3R | 32079331 | 3R | 18597957..18598469 | 580..68 | 2565 | 100 | Minus |
| 3R | 32079331 | 3R | 18593842..18594047 | 2146..1941 | 1030 | 100 | Minus |
| 3R | 32079331 | 3R | 18593629..18593777 | 2292..2144 | 745 | 100 | Minus |
| 3R | 32079331 | 3R | 18620356..18620407 | 68..17 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 15:10:32 has no hits.
BS32928.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-07 10:51:46 Download gff for
BS32928.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14304-RC | 167..2994 | 17..2844 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:32:58 Download gff for
BS32928.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14304-RC | 167..2994 | 17..2844 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:32:58 Download gff for
BS32928.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18593019..18593573 | 2290..2844 | 100 | <- | Minus |
| 3R | 18593632..18593774 | 2147..2289 | 100 | <- | Minus |
| 3R | 18593842..18594047 | 1941..2146 | 100 | <- | Minus |
| 3R | 18594100..18594884 | 1156..1940 | 99 | <- | Minus |
| 3R | 18597103..18597671 | 587..1155 | 100 | <- | Minus |
| 3R | 18597953..18598468 | 69..586 | 99 | <- | Minus |
| 3R | 18620356..18620407 | 17..68 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-07 10:51:46 Download gff for
BS32928.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14418741..14419295 | 2290..2844 | 100 | <- | Minus |
| arm_3R | 14419354..14419496 | 2147..2289 | 100 | <- | Minus |
| arm_3R | 14419564..14419769 | 1941..2146 | 100 | <- | Minus |
| arm_3R | 14419822..14420606 | 1156..1940 | 99 | <- | Minus |
| arm_3R | 14422825..14423393 | 587..1155 | 100 | <- | Minus |
| arm_3R | 14423675..14424190 | 69..586 | 99 | <- | Minus |
| arm_3R | 14446078..14446129 | 17..68 | 100 | | Minus |
BS32928.pep Sequence
Translation from 16 to 2844
> BS32928.pep
MWIPKGRWSDWLMPLAFVAILVSSSQATGSASQPAPINRNPRGSHNSSGI
GDSELSASERSRRLIPYMAFYLPAPELPINQQYATKHSSSAGGAQLQAPL
PGPGRIPVPVAYMPQQKHHPHHHGPPHPPPGPHYQSGAGEVYHSLAIGGH
QHQHAPPHPPPGHVKEQQAITNSGATYIAYKPLNPTHKHKTVQHFPPLPP
SPKEQVQQQHPQQHHHLLHHQQQQQQQQQQPQQYEILSSSLVASQAQRQR
GKQSKINLTPFTAQNTLPGQFIPIIYTPVSSSKPGSPGDAINYNNIQSNL
KQPEIVYKNSHQTQIVTDYAAGAAASAEQPPLSSSGEEVDETNGEKMVEQ
QQEDHRAQEEAVEQQQQQPQLHQQVQNNPSSPAPPQFIDYLIDGPRQSLE
EEQQHSQHERPSAHQPPQHAYILVTTTAPHIEHQPAPQMHPEISTPRPPI
LYNQQPTLRLRPVHTYKATRRPIYVTTPAPAVSPTSSHTVEITPKFVYVS
GKPPTGQNPELPLREPSTVTPIKLKPVYKYAHERPPLTPAYVPEDQDQLP
DIRTSSLAEILHKLQASNHLPQTLTPDNIDNSIKTLIRILQNLKQTQTIV
ANPPQHHDEHKSSAQDYDYNTGSEEEHHSQSEEAIARPKGPNKHPGPSTG
RPGIDYPNYAEIPQTSFECTKQRYKGFFGDPETNCQVWHYCDLNGGKASF
LCPNGTIFSQIALTCDWWFNVKCSTTAQLYVLNERLYKYILPFNPKFPED
YNGPIVDKYLAMKFQEMEEKMRLEKQRKAAQEAQKPEEAPSTLPALPKNH
KPEPKHGSGINAQVYEQSSEKNLLIDDEIDDISERGTYDTYDQTAPTTIM
APTSTQDTQSFVLKPIVVSSTPQPLPEIDFEVEPTAPGSSEEEDHLQSLR
ETKEAEKKTRESTKVSVEKLEVIEIKTDGNTGQLMPIKSSSK*
BS32928.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 10:08:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14304-PC | 942 | CG14304-PC | 1..942 | 1..942 | 5055 | 100 | Plus |
| CG14304-PB | 1136 | CG14304-PB | 407..1136 | 152..942 | 3066 | 76.7 | Plus |
| CG14304-PA | 1136 | CG14304-PA | 407..1136 | 152..942 | 3066 | 76.7 | Plus |
| CG14304-PB | 1136 | CG14304-PB | 1..665 | 1..672 | 2055 | 63.5 | Plus |
| CG14304-PA | 1136 | CG14304-PA | 1..665 | 1..672 | 2055 | 63.5 | Plus |
| CG14301-PB | 196 | CG14301-PB | 85..173 | 650..738 | 332 | 58.4 | Plus |
| CG14608-PC | 1137 | CG14608-PC | 61..191 | 617..745 | 266 | 42.5 | Plus |
