BS32939.complete Sequence
3416 bp assembled on 2014-07-07
GenBank Submission: KX802643
> BS32939.complete
GAAGTTATCAGTCGACATGTCATTGTTATATCGGTGCGCTTGGGGGAACC
AGCAGATCTACAGACTTGAAGATGACGAGGACTTCACCTCGTCCGCTGGG
TACGATGCAGATGATGGGGAGAGGCGTATCATAAACCTAAATGGGCCACA
GCCCACTAAGTACGGTAATAATCGCATAACGACGGCAAAATATAGTTTCA
TCAGCTTTTTGCCCGCGTTCCTGTTCGAGCAATTCCGGCGTTACTCCAAC
TGCTTTTTCCTGCTAATTGCCATACTGCAACAAATCCCGGAGGTGTCGCC
GACGGGTCGTTACACCACGCTAGTGCCACTGATGTTCATCCTTTCGGTGA
GCGCCATTAAGGAGATAATCGAGGACATTAAACGACATCGGGCGGATAAT
GAGATCAATCACCGATCGATAGAGCGCCTGGATAGTGGCTCGTGGTGCAC
AGTTCGCTGGTCGGAGTTGACGGTGGGCGATATCATCAAAGTGGGAATCA
ATACCTTCTTCCCCGCCGATCTGATTCTGCTGTCGTCCAGTGAACCGCAG
GCCATGTGCTTCATAGAGACGGCCAATTTGGATGGTGAGACCAACCTGAA
GATTCGACAGGCCCTCCCAGCCACCGCTGAACTGCTGGAGACGAAGGATC
TGCAACGATTGGAGGGCAGGATCGAGTGCGAGCTGCCCAACCGGCATTTA
TACGAGTTTAACGGAGTGCTCAGGGAAACTGGAAAGCCACCCGCTGCTTT
GGGCAATGATCAGGTGCTCCAACGTGGCGCCATTCTTCGGAACACGGCAT
GGGTGTTCGGGATCGTGGTCTACTCCGGGCAAGAGACGAAGCTGATGAAG
AACTCTACCTCGGCGCCATTGAAGCGCTCAACCGTAGACAAGCTGACCAA
CACCCAGATCCTCATGCTCTTCATGATCCTCATCTCATTGTGCATCATCA
GCGGCTTGTGCAATCTGTTCTGGACAAGGGAACATTCGGAAACGGACTGG
TACCTGGGCCTAACCGACTTCAAGACCAAGAGCCTTGGCTACAACCTGCT
GACCTTCTTCATTCTGTACAACAACCTGATCCCCATCTCGCTACAGGTGA
CGCTTGAGCTTGTGCGTTTCCTGCAGGCCATTTTCATAAACTACGACATT
GAGATGTATCACGAGGAATCAAACACGCCCGCCATGGCGCGCACCTCGAA
CTTGAACGAAGAGCTGGGCATGGTCAAGTATATATTCTCGGACAAGACAG
GCACCCTCACGCAGAACGTGATGGAGTTCAAGAAATGCTCCATCGCCGGA
TACGTATACACAGCTGAGCGAACGCCGGAGGAATCTCAGCTAGTGCAGAA
TATCCTCGGTCGTCATGAGACGTCCGCCGTGATAGAGGAGTTCCTGGAAC
TCCTATCGGTGTGCCATACGGTAATACCCGAGCGCAAGGAAAACGGCAAC
ATGATCTACCACGCTGCCAGTCCGGATGAGCGTGCTCTGGTGGAAGGTGC
CCAGAAATTTGGCTACATCTTCGATACACGAACGCCAAAGTATGTGGAGA
TCAATGCGCTAGGCGTGCGAAAGCGATACGAAGTTCTGAATGTCCTGGAG
TTCACCTCGTCGCGTAAGCGTATGTCGTTGATTGTTCGCACGCCGGAAAA
TAAGATCAAGCTATTCTGCAAGGGAGCGGACACGGTGATATACGAACGTC
TGGCTCCTCAGGGTCAAGCCTTCCGGGAACAGACGCTGCGTCATTTGGAG
GAGTTTGCATCGGATGGATTGCGGACCCTCTGTTTGGCAGTTGCTGACAT
TCGGCCGGATGTTTACCAAGAATGGAGCCAGACTTTCGACAAGGCATCGG
TGGCTCTTCAGAATCGCGAGAGCAAGTTGGAGGACGCGGCCAATCTGATT
GAGAACAATCTTCGTCTACTTGGCGCCACGGCAATCGAAGATAGACTGCA
GGATGGTGTGCCGGAAACGATTGCCTCTCTTCTGGACGCCGGCATCTATA
TCTGGGTCCTTACCGGTGACAAGCAGGAGACGGCCATTAATATTGGCTAC
TCCTGCCGTCTGATTAGCCACTCCATGGATATCATAATACTAAACGAGGA
GAGCCTCGATGCCACCCGCGAAGTCATTCATCGCCATTATGGAGAATTCA
AGAGTTCGTCGGCGAAGGACGCCAATGTGGCACTAGTCATCGATGGTACT
ACGCTGAAGTACGCCCTTAGCTGCGACCTGCGCAATGATTTCCAAGACTT
GTGCATTCTGTGTCGGGTGGTCATCTGCTGCAGAGTGTCTCCAATGCAAA
AGGCTGAGGTGGTCGAGATGGTCACCCAGAGCACGAATGCAGTGACCCTA
GCCATTGGCGATGGAGCCAACGACGTGGCAATGATCCAAAAAGCGAACGT
GGGAATCGGCATATCTGGAGTTGAGGGTCTCCAGGCGGCATGCGCATCGG
ACTACTCGATCGCCCAGTTTCGCTATTTGCAGCGCCTACTCTTGGTCCAT
GGTGCTTGGAACTACGCTAGGATCTCCAAGCTGATCCTGTACAGCTTCTA
CAAGAACGTGTGTCTGTATGTTATCGAACTGTGGTTCGCCGTCTACTCCG
GCTGGTCGGGCCAGATCCTGTTTGAACGCTGGACAATTGGCTTGTACAAT
GTGCTATTCACGGCCATGCCGCCGTTTGCGATGGGACTCTTTGAGAAATT
CTGCACGGCGGAAACGATGATCCGGTACCCGATGCTTTATAAAACATCAC
AGAATGCGAAGCTCTTCAATGTGAAGGTGTTTTGGATCTGGATATTCAAT
GCGCTACTGCACTCGGTGTTCCTTTTCTGGTTACCGCTGGCAGCATACAC
AAAGGAAGTGATCTGGAGCGATGGCAAGACCAGTGATTACCTATTGATGG
GCAACCTCGTTTATACTTACGTGATTGTTACCGTTTGCCTGAAGGCTGGA
CTCATCACCAATTCGTGGACCTGGCTTACCCATCTGGCCATTTGGGGCTC
AATTGTCCTGTGGTTCGGATTTCTGCTGATTTATAGCCATGTGTGGCCAA
TGTTCAAGTTCGCGAGCAACTTCCGCGGCATGGACATACAGTTGCTATCG
ACGCCAGTTTTCTATTTCTGCTTGATGCTGGTGCCCATTACCACGCTGCT
GATCGATGTGATCTGCAAACTCGTACATAATACCGTGTTTAAGACACTGA
CGGAGGCTGTTCGCGAAACGGAGATCCGACGCAGCGACATCTCCGAAGTG
ATGAACGAACCGCGATCTTCTACCATGTATGCCTTGGGATCGATAATTCG
GTATGGCTATGCGTTTTCCCAGGAGGAGGGCGGAGCTGTGCCGCAGTCTA
TCATTATACGTGCCTATGATACGAATCTGCCAAAGCCCGAGGGTAACTAA
AAGCTTTCTAGACCAT
BS32939.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 15:10:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42321-RS | 3384 | CG42321-PS | 1..3384 | 17..3400 | 16905 | 100 | Plus |
| CG42321-RH | 4053 | CG42321-PH | 592..3795 | 68..3271 | 16005 | 100 | Plus |
| CG42321-RQ | 3798 | CG42321-PQ | 592..3794 | 68..3270 | 16000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:10:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42321-RS | 3980 | CG42321-RS | 53..3441 | 13..3401 | 16915 | 99.9 | Plus |
| CG42321-RH | 5566 | CG42321-RH | 1350..4553 | 68..3271 | 16005 | 100 | Plus |
| CG42321-RQ | 5460 | CG42321-RQ | 1350..4552 | 68..3270 | 16000 | 100 | Plus |
| CG42321-RH | 5566 | CG42321-RH | 4929..5027 | 3303..3401 | 495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 15:10:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13420335..13421707 | 2111..739 | 6850 | 99.9 | Minus |
| 2R | 25286936 | 2R | 13419464..13420270 | 2917..2111 | 4035 | 100 | Minus |
| 2R | 25286936 | 2R | 13419147..13419400 | 3171..2918 | 1270 | 100 | Minus |
| 2R | 25286936 | 2R | 13421839..13422039 | 738..538 | 1005 | 100 | Minus |
| 2R | 25286936 | 2R | 13422320..13422505 | 379..194 | 930 | 100 | Minus |
| 2R | 25286936 | 2R | 13422099..13422259 | 540..380 | 805 | 100 | Minus |
| 2R | 25286936 | 2R | 13422602..13422727 | 195..70 | 630 | 100 | Minus |
| 2R | 25286936 | 2R | 13415517..13415615 | 3401..3303 | 495 | 100 | Minus |
| 2R | 25286936 | 2R | 13418987..13419085 | 3270..3172 | 495 | 100 | Minus |
| 2R | 25286936 | 2R | 13428712..13428770 | 71..13 | 280 | 98.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 15:10:37 has no hits.
BS32939.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-07 10:51:48 Download gff for
BS32939.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42321-RS | 57..3438 | 17..3398 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:33:00 Download gff for
BS32939.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42321-RS | 57..3438 | 17..3398 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:33:00 Download gff for
BS32939.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13415520..13415615 | 3303..3398 | 100 | <- | Minus |
| 2R | 13416575..13416606 | 3271..3302 | 100 | <- | Minus |
| 2R | 13418987..13419085 | 3172..3270 | 100 | <- | Minus |
| 2R | 13419147..13419400 | 2918..3171 | 100 | <- | Minus |
| 2R | 13419464..13420270 | 2111..2917 | 100 | <- | Minus |
| 2R | 13420336..13421707 | 739..2110 | 99 | <- | Minus |
| 2R | 13421839..13422036 | 541..738 | 100 | <- | Minus |
| 2R | 13422099..13422259 | 380..540 | 100 | <- | Minus |
| 2R | 13422320..13422503 | 196..379 | 100 | <- | Minus |
| 2R | 13422602..13422725 | 72..195 | 100 | <- | Minus |
| 2R | 13428712..13428766 | 17..71 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-07 10:51:48 Download gff for
BS32939.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9303025..9303120 | 3303..3398 | 100 | <- | Minus |
| arm_2R | 9304080..9304111 | 3271..3302 | 100 | <- | Minus |
| arm_2R | 9306492..9306590 | 3172..3270 | 100 | <- | Minus |
| arm_2R | 9306652..9306905 | 2918..3171 | 100 | <- | Minus |
| arm_2R | 9306969..9307775 | 2111..2917 | 100 | <- | Minus |
| arm_2R | 9307841..9309212 | 739..2110 | 99 | <- | Minus |
| arm_2R | 9309344..9309541 | 541..738 | 100 | <- | Minus |
| arm_2R | 9309604..9309764 | 380..540 | 100 | <- | Minus |
| arm_2R | 9309825..9310008 | 196..379 | 100 | <- | Minus |
| arm_2R | 9310107..9310230 | 72..195 | 100 | <- | Minus |
| arm_2R | 9316217..9316271 | 17..71 | 100 | | Minus |
BS32939.pep Sequence
Translation from 16 to 3399
> BS32939.pep
MSLLYRCAWGNQQIYRLEDDEDFTSSAGYDADDGERRIINLNGPQPTKYG
NNRITTAKYSFISFLPAFLFEQFRRYSNCFFLLIAILQQIPEVSPTGRYT
TLVPLMFILSVSAIKEIIEDIKRHRADNEINHRSIERLDSGSWCTVRWSE
LTVGDIIKVGINTFFPADLILLSSSEPQAMCFIETANLDGETNLKIRQAL
PATAELLETKDLQRLEGRIECELPNRHLYEFNGVLRETGKPPAALGNDQV
LQRGAILRNTAWVFGIVVYSGQETKLMKNSTSAPLKRSTVDKLTNTQILM
LFMILISLCIISGLCNLFWTREHSETDWYLGLTDFKTKSLGYNLLTFFIL
YNNLIPISLQVTLELVRFLQAIFINYDIEMYHEESNTPAMARTSNLNEEL
GMVKYIFSDKTGTLTQNVMEFKKCSIAGYVYTAERTPEESQLVQNILGRH
ETSAVIEEFLELLSVCHTVIPERKENGNMIYHAASPDERALVEGAQKFGY
IFDTRTPKYVEINALGVRKRYEVLNVLEFTSSRKRMSLIVRTPENKIKLF
CKGADTVIYERLAPQGQAFREQTLRHLEEFASDGLRTLCLAVADIRPDVY
QEWSQTFDKASVALQNRESKLEDAANLIENNLRLLGATAIEDRLQDGVPE
TIASLLDAGIYIWVLTGDKQETAINIGYSCRLISHSMDIIILNEESLDAT
REVIHRHYGEFKSSSAKDANVALVIDGTTLKYALSCDLRNDFQDLCILCR
VVICCRVSPMQKAEVVEMVTQSTNAVTLAIGDGANDVAMIQKANVGIGIS
GVEGLQAACASDYSIAQFRYLQRLLLVHGAWNYARISKLILYSFYKNVCL
YVIELWFAVYSGWSGQILFERWTIGLYNVLFTAMPPFAMGLFEKFCTAET
MIRYPMLYKTSQNAKLFNVKVFWIWIFNALLHSVFLFWLPLAAYTKEVIW
SDGKTSDYLLMGNLVYTYVIVTVCLKAGLITNSWTWLTHLAIWGSIVLWF
GFLLIYSHVWPMFKFASNFRGMDIQLLSTPVFYFCLMLVPITTLLIDVIC
KLVHNTVFKTLTEAVRETEIRRSDISEVMNEPRSSTMYALGSIIRYGYAF
SQEEGGAVPQSIIIRAYDTNLPKPEGN*
BS32939.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 10:08:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42321-PS | 1127 | CG42321-PS | 1..1127 | 1..1127 | 5843 | 100 | Plus |
| CG42321-PG | 1324 | CG42321-PG | 198..1324 | 18..1127 | 5664 | 97.7 | Plus |
| CG42321-PO | 1275 | CG42321-PO | 149..1275 | 18..1127 | 5660 | 97.6 | Plus |
| CG42321-PN | 1275 | CG42321-PN | 149..1275 | 18..1127 | 5660 | 97.6 | Plus |
| CG42321-PM | 1150 | CG42321-PM | 26..1150 | 20..1127 | 5653 | 97.7 | Plus |
