BS32940.complete Sequence
887 bp assembled on 2014-01-22
GenBank Submission: KX802654
> BS32940.complete
GAAGTTATCAGTCGACATGGCACGCGACACACAAGGAACGCAGGGAACCC
AGAGTCAGGCCTCCAATATCTGGACGCAGGTGGAGAGCCAGCCGATGGAG
AAGATAGTCTGGGGTCGATTGTACGGCAAGAACATTAAGATCAAATCGCT
GGATCTCAACAACGACGAGTTCACCGCAGGACGAGGGGAGGCCAACGACT
TGATCCTCACGCTCAACGATTTGCCCGAGAAAATCCTGACGCGCATTTCC
AAAGTGCATTTTATCATAAAGCGGGCAAACTGCGAACTTACCAATCCAGT
TTATATTCAGGATCTCTCACGCAACGGGACGTTTGTGAATAACGAGAAAA
TTGGCACAAACAGGATGCGAATCCTAAAGAATGACGACGTAATTTCCCTG
TCCCACCCAACGTACAAAGCCTTTGTATTCAAGGATCTCAGCCCGAATGA
GTCGATCGGGCTTCCCGAGGAGATTAACAAGACGTATTATGTAAATCGCA
AGCTGGGATCTGGAGCGTACGGACTGGTGCGTTTGGTCTATGACACCCGC
ACCTGCCAGCAGTTTGCGATGAAAATCGTTAAGAAGAATATGCTCTCTGG
GGCGCGACCCAGTACCAATTTCAGTGATCCCGACCGGGTGCTGAACGAAG
CCAAGATTATGAAGAATCTTTCACATCCGTGCGTGGTTCGCATGCACGAC
ATCGTGGACAAGCCGGATTCTGTGTATATGGTGCTGGAGTTTATGCGCGG
CGGCGACCTGCTTAACCGGATCATCAGCAACAAACTACTTAGCGAGGACA
TCTCGAAGCTTTACTTTTACCAAATGTGCCATGCCGTCAAGTACCTACAC
GATCGGGGTAAAACAAATTAGAAGCTTTCTAGACCAT
BS32940.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:48:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lok-RD | 855 | CG10895-PD | 1..855 | 17..871 | 4275 | 100 | Plus |
| lok-RC | 1380 | CG10895-PC | 1..842 | 17..858 | 4210 | 100 | Plus |
| lok-RB | 1380 | CG10895-PB | 1..842 | 17..858 | 4210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:48:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lok-RD | 2310 | CG10895-RD | 381..1235 | 17..871 | 4275 | 100 | Plus |
| lok-RC | 2163 | CG10895-RC | 381..1222 | 17..858 | 4210 | 100 | Plus |
| lok-RB | 2105 | CG10895-RB | 320..1161 | 17..858 | 4210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:48:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20062732..20063185 | 418..871 | 2270 | 100 | Plus |
| 2L | 23513712 | 2L | 20062147..20062306 | 152..311 | 800 | 100 | Plus |
| 2L | 23513712 | 2L | 20061877..20062012 | 17..152 | 680 | 100 | Plus |
| 2L | 23513712 | 2L | 20062542..20062653 | 308..419 | 560 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:48:28 has no hits.
BS32940.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-22 13:05:39 Download gff for
BS32940.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lok-RD | 381..1235 | 17..871 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:23:37 Download gff for
BS32940.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lok-RD | 381..1235 | 17..871 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:23:37 Download gff for
BS32940.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20061877..20062012 | 17..152 | 100 | -> | Plus |
| 2L | 20062148..20062305 | 153..310 | 100 | -> | Plus |
| 2L | 20062545..20062653 | 311..419 | 100 | -> | Plus |
| 2L | 20062734..20063185 | 420..871 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-22 13:05:39 Download gff for
BS32940.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20061877..20062012 | 17..152 | 100 | -> | Plus |
| arm_2L | 20062148..20062305 | 153..310 | 100 | -> | Plus |
| arm_2L | 20062545..20062653 | 311..419 | 100 | -> | Plus |
| arm_2L | 20062734..20063185 | 420..871 | 100 | | Plus |
BS32940.pep Sequence
Translation from 16 to 870
> BS32940.pep
MARDTQGTQGTQSQASNIWTQVESQPMEKIVWGRLYGKNIKIKSLDLNND
EFTAGRGEANDLILTLNDLPEKILTRISKVHFIIKRANCELTNPVYIQDL
SRNGTFVNNEKIGTNRMRILKNDDVISLSHPTYKAFVFKDLSPNESIGLP
EEINKTYYVNRKLGSGAYGLVRLVYDTRTCQQFAMKIVKKNMLSGARPST
NFSDPDRVLNEAKIMKNLSHPCVVRMHDIVDKPDSVYMVLEFMRGGDLLN
RIISNKLLSEDISKLYFYQMCHAVKYLHDRGKTN*
BS32940.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:52:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lok-PD | 284 | CG10895-PD | 1..284 | 1..284 | 1478 | 100 | Plus |
| lok-PC | 459 | CG10895-PC | 1..284 | 1..284 | 1465 | 99.3 | Plus |
| lok-PB | 459 | CG10895-PB | 1..284 | 1..284 | 1465 | 99.3 | Plus |
| lok-PA | 476 | CG10895-PA | 1..301 | 1..284 | 1437 | 93.7 | Plus |
| CG17528-PD | 748 | CG17528-PD | 469..593 | 149..281 | 183 | 31.6 | Plus |
