BS32946.complete Sequence
1847 bp assembled on 2014-07-17
GenBank Submission: KX800584
> BS32946.complete
GAAGTTATCAGTCGACATGCAGGTGGAGCCTCAGGGAGTTCCAACGTACA
GCGATAAATTGCCGCCTGATACTCTTTGGTTTAGGTACCCCGTTAATCAA
ACAAATGGCACAAAGCCGCCAGAGGGAATCAAGACGTATGCCTACGTGTT
TCGAGGACAGGTACACGATGTGGATGAGAACGAAATCGATCTTAAGGCAA
CGTTCGATCCGGAGGTATTTTTCAATATTATCCTGCCCCCAATTATCTTT
TATGCGGGCTATAGCTTGAAAAAGAAATACTTCTTTCGCAACTTGGGTGC
CATACTTACGTTTGCCATTGTGGGCACGACTTTGTCGGCCTTCCTAATCG
GAGGCTTCATGTACGGCTGTGTGAAACTGATGCCAAAGTACTTGAGTAGC
AGTTTCACATTCCTGGACTCCTTATACTTTGGAGCTCTGATATCGCCCAC
AGATCCGCTCACCATTCTAGCCATATTCAACGATCTTAGGGTCGACGTAA
ACCTATATGCGCTAGTCTTGGGCGAATCTGTGCTCAACGATGCCGTGGCC
ATAGTCCTTAGTGGAGCCATTCAAAATTATGGTGAACACTATTCCAATAC
CGGGGAATTCGAAACTACAGCTTTTCTACGCTCGTTGAGCGATTTCTTCT
CCATCTTCTTACTATCCCTGATGATTGGCGCGGCCATGGGATGCTTGACA
GCATTGATGACCAAATTTACTCGGGTTCGAGACTTTCCTTTGCTAGAATC
CGCGCTCTTCGTGCTCATGAGCTACAGCACCTTCCTGCTGGCTGAGGCTA
CGGAACTTACTGGTGTGGTGGCCGTGCTCTTCTGCGGCATCTGCCAGGCT
CACTACACGTACAACAACTTGTCGGAGGACTCGCGCCAAAGGACAAAACA
GATATTCGAGCTCCTGAACTTTCTAGCCGAGAATTTTATCTTTTCCTACA
TTGGCGTATCGATGTTCACCTTTCCCAAGCATCATTTTGACGCCGGTTTC
ATTATAACAGCTTTTATTTGCGCTGCCATTGGAAGGGCGGTGAATGTGTA
TCCCTTGTCCTGGCTGCTGAACATAAAGCGAAAGCCGAAAATTTCCACAA
ACTTTCAGCATATGTTGTTCTTTGCTGGACTTCGTGGCGCCATGTCCTTT
GCCTTGGCCATCCGAAATACAGTGTCGGACGAACGACAGACGATGCTGAC
TGCCACATCGCTGATTGTCATCTTTACGGTTGTAATTCAGGGTGGGGCTG
CAAATTTCCTGCTTAATTGGTTGAAAATACCCGTTGGCGTGGACGATGAG
ACTGAACAACTCAATAACTATCAAGTGCACAGTTCTGATGGTTATTTGCA
GGATGTGGAGGGCGGTGGCGTTAATCGCAACAAGATGCGCTTGTCCGGTG
GAACAGATACGAACTTGGACACGCCCGTCGATGGTACGAATGGCAGTTTG
GGCGGAGCAAGCGGCGGTCGCCGGCGCAACAGCCACGAGAAGGCCATTCT
TGCTAGGATCTGGGGAAACTTTGATACCAAGTACATGAAGCCCTTACTGA
CGCACTCGCGACCCACTTTGCTGGAGACGCTGCCCGTTTGCTGCAATCCC
ATTGCCAGACTGCTCACCACCACACAGCAACTAACGCAGGATGGAAGCGA
GTTCAGACGCGTGGACTCGGACTCGGACATTTGCATAGACAATGATACCG
GGAACGGTCTCAGTCAGGATGGGTCCGGAGCGGCACCAGGCGTGGGGCGT
CGGAACTCCCTGAGTCGCGTAAGTATTAAGTACACCGCCGATAATCACCA
TCTACTTGCTAGCTACCGAAATATTGAATAAAAGCTTTCTAGACCAT
BS32946.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 15:11:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nhe3-RI | 1815 | CG11328-PI | 1..1815 | 17..1831 | 9075 | 100 | Plus |
| Nhe3-RE | 2064 | CG11328-PE | 274..2033 | 11..1770 | 8785 | 99.9 | Plus |
| Nhe3-RJ | 2049 | CG11328-PJ | 274..2031 | 11..1768 | 8775 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:11:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nhe3-RI | 2605 | CG11328-RI | 183..2003 | 11..1831 | 9090 | 99.9 | Plus |
| Nhe3-RE | 3362 | CG11328-RE | 683..2442 | 11..1770 | 8785 | 99.9 | Plus |
| Nhe3-RJ | 3001 | CG11328-RJ | 683..2440 | 11..1768 | 8775 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 15:11:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6681464..6681772 | 1015..707 | 1545 | 100 | Minus |
| 2L | 23513712 | 2L | 6682141..6682432 | 564..273 | 1460 | 100 | Minus |
| 2L | 23513712 | 2L | 6680344..6680542 | 1532..1334 | 995 | 100 | Minus |
| 2L | 23513712 | 2L | 6679923..6680117 | 1831..1637 | 975 | 100 | Minus |
| 2L | 23513712 | 2L | 6682495..6682684 | 274..85 | 950 | 100 | Minus |
| 2L | 23513712 | 2L | 6681065..6681219 | 1281..1127 | 775 | 100 | Minus |
| 2L | 23513712 | 2L | 6681941..6682085 | 708..564 | 725 | 100 | Minus |
| 2L | 23513712 | 2L | 6681278..6681390 | 1128..1016 | 565 | 100 | Minus |
| 2L | 23513712 | 2L | 6680174..6680283 | 1640..1531 | 550 | 100 | Minus |
| 2L | 23513712 | 2L | 6682746..6682820 | 85..11 | 360 | 98.7 | Minus |
| 2L | 23513712 | 2L | 6680947..6680998 | 1333..1282 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 15:11:24 has no hits.
BS32946.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-17 10:53:48 Download gff for
BS32946.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nhe3-RI | 189..2001 | 17..1829 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:33:14 Download gff for
BS32946.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nhe3-RI | 189..2001 | 17..1829 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:33:14 Download gff for
BS32946.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6681065..6681218 | 1128..1281 | 100 | <- | Minus |
| 2L | 6681279..6681390 | 1016..1127 | 100 | <- | Minus |
| 2L | 6681941..6682084 | 565..708 | 100 | <- | Minus |
| 2L | 6681464..6681770 | 709..1015 | 100 | <- | Minus |
| 2L | 6679925..6680114 | 1640..1829 | 100 | <- | Minus |
| 2L | 6680175..6680283 | 1531..1639 | 100 | <- | Minus |
| 2L | 6680346..6680542 | 1334..1530 | 100 | <- | Minus |
| 2L | 6680947..6680998 | 1282..1333 | 100 | <- | Minus |
| 2L | 6682141..6682430 | 275..564 | 100 | <- | Minus |
| 2L | 6682495..6682683 | 86..274 | 100 | <- | Minus |
| 2L | 6682746..6682814 | 17..85 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-17 10:53:48 Download gff for
BS32946.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6681464..6681770 | 709..1015 | 100 | <- | Minus |
| arm_2L | 6681941..6682084 | 565..708 | 100 | <- | Minus |
| arm_2L | 6682141..6682430 | 275..564 | 100 | <- | Minus |
| arm_2L | 6682495..6682683 | 86..274 | 100 | <- | Minus |
| arm_2L | 6682746..6682814 | 17..85 | 100 | | Minus |
| arm_2L | 6679925..6680114 | 1640..1829 | 100 | <- | Minus |
| arm_2L | 6680175..6680283 | 1531..1639 | 100 | <- | Minus |
| arm_2L | 6680346..6680542 | 1334..1530 | 100 | <- | Minus |
| arm_2L | 6680947..6680998 | 1282..1333 | 100 | <- | Minus |
| arm_2L | 6681065..6681218 | 1128..1281 | 100 | <- | Minus |
| arm_2L | 6681279..6681390 | 1016..1127 | 100 | <- | Minus |
BS32946.pep Sequence
Translation from 16 to 1830
> BS32946.pep
MQVEPQGVPTYSDKLPPDTLWFRYPVNQTNGTKPPEGIKTYAYVFRGQVH
DVDENEIDLKATFDPEVFFNIILPPIIFYAGYSLKKKYFFRNLGAILTFA
IVGTTLSAFLIGGFMYGCVKLMPKYLSSSFTFLDSLYFGALISPTDPLTI
LAIFNDLRVDVNLYALVLGESVLNDAVAIVLSGAIQNYGEHYSNTGEFET
TAFLRSLSDFFSIFLLSLMIGAAMGCLTALMTKFTRVRDFPLLESALFVL
MSYSTFLLAEATELTGVVAVLFCGICQAHYTYNNLSEDSRQRTKQIFELL
NFLAENFIFSYIGVSMFTFPKHHFDAGFIITAFICAAIGRAVNVYPLSWL
LNIKRKPKISTNFQHMLFFAGLRGAMSFALAIRNTVSDERQTMLTATSLI
VIFTVVIQGGAANFLLNWLKIPVGVDDETEQLNNYQVHSSDGYLQDVEGG
GVNRNKMRLSGGTDTNLDTPVDGTNGSLGGASGGRRRNSHEKAILARIWG
NFDTKYMKPLLTHSRPTLLETLPVCCNPIARLLTTTQQLTQDGSEFRRVD
SDSDICIDNDTGNGLSQDGSGAAPGVGRRNSLSRVSIKYTADNHHLLASY
RNIE*
BS32946.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 10:09:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nhe3-PI | 604 | CG11328-PI | 1..604 | 1..604 | 3128 | 100 | Plus |
| Nhe3-PE | 687 | CG11328-PE | 94..678 | 1..585 | 3028 | 100 | Plus |
| Nhe3-PJ | 682 | CG11328-PJ | 94..677 | 1..584 | 3024 | 100 | Plus |
| Nhe3-PD | 711 | CG11328-PD | 94..698 | 1..594 | 3005 | 96.9 | Plus |
| Nhe3-PH | 696 | CG11328-PH | 94..674 | 1..587 | 2980 | 98.6 | Plus |
