BS32947.complete Sequence
677 bp assembled on 2014-01-22
GenBank Submission: KX805413
> BS32947.complete
GAAGTTATCAGTCGACATGAAAGTGTGGGTGCGCCAAGATAAACACACAT
TCTTGCTTAACAAAGACGAACGGGGAAAAAAACCGGGAATGACGGCGAAC
ATAACGAAGAGTCCGCGCCCGCTGAAAATAACCATCGTGGGCGATGGCAT
GGTGGGCAAAACCTGCATGCTGATAACCTACACACGGAACGAGTTCCCCG
AGGAGTACATACCCACAGTGTTCGACAATCACGCCTGCAACATAGCCGTA
GATGATCGGGACTACAATCTGACCCTCTGGGACACTGCCGGCCAGGAGGA
TTACGAAAGGCTGCGCCCCCTGAGCTATCCCAGTACCAACTGCTTCCTGT
TGTGCTATTCGATCAGCAGTAGGACCTCATTCGAAAACGTGAAAAGCAAG
TGGTGGCCGGAGATCCGTCACTTCTCCGCCCACGTTCCCGTGGTTCTCGT
GGGCACCAAACTGGACTTGCGCATTCCCAACTCGGAGAAGTTCGTGACCA
CACAGGAGGGAAAAAAGATGCGCAAAGAGATACACGCATTCAACTTGGTC
GAGTGCTCCGCCAAGAAGAAGCAGAACCTGCAGCAGGTCTTCGAGGAGGC
GGTTAGAGCCGTGGAGAGGAAACCAAAGACGACGTCCAAGCAATCGTGCA
AAATACTGTGAAAGCTTTCTAGACCAT
BS32947.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:48:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoL-RB | 645 | CG9366-PB | 1..645 | 17..661 | 3225 | 100 | Plus |
| RhoL-RA | 573 | CG9366-PA | 1..573 | 89..661 | 2865 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:48:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoL-RB | 1205 | CG9366-RB | 245..890 | 17..662 | 3230 | 100 | Plus |
| RhoL-RA | 1041 | CG9366-RA | 207..820 | 49..662 | 3070 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:48:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9497880..9498164 | 334..50 | 1425 | 100 | Minus |
| 3R | 32079331 | 3R | 9497631..9497802 | 506..335 | 860 | 100 | Minus |
| 3R | 32079331 | 3R | 9497416..9497575 | 662..503 | 800 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:48:23 has no hits.
BS32947.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-22 13:05:37 Download gff for
BS32947.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoL-RB | 245..888 | 17..660 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:23:34 Download gff for
BS32947.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoL-RB | 245..888 | 17..660 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:23:34 Download gff for
BS32947.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9497418..9497572 | 506..660 | 100 | <- | Minus |
| 3R | 9497632..9497802 | 335..505 | 100 | <- | Minus |
| 3R | 9497880..9498164 | 50..334 | 100 | <- | Minus |
| 3R | 9498233..9498265 | 17..49 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-22 13:05:37 Download gff for
BS32947.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5323140..5323294 | 506..660 | 100 | <- | Minus |
| arm_3R | 5323354..5323524 | 335..505 | 100 | <- | Minus |
| arm_3R | 5323602..5323886 | 50..334 | 100 | <- | Minus |
| arm_3R | 5323955..5323987 | 17..49 | 100 | | Minus |
BS32947.pep Sequence
Translation from 16 to 660
> BS32947.pep
MKVWVRQDKHTFLLNKDERGKKPGMTANITKSPRPLKITIVGDGMVGKTC
MLITYTRNEFPEEYIPTVFDNHACNIAVDDRDYNLTLWDTAGQEDYERLR
PLSYPSTNCFLLCYSISSRTSFENVKSKWWPEIRHFSAHVPVVLVGTKLD
LRIPNSEKFVTTQEGKKMRKEIHAFNLVECSAKKKQNLQQVFEEAVRAVE
RKPKTTSKQSCKIL*
BS32947.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:52:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoL-PB | 214 | CG9366-PB | 1..214 | 1..214 | 1140 | 100 | Plus |
| RhoL-PA | 190 | CG9366-PA | 1..190 | 25..214 | 1007 | 100 | Plus |
| Cdc42-PD | 191 | CG12530-PD | 4..191 | 36..214 | 516 | 51.6 | Plus |
| Cdc42-PC | 191 | CG12530-PC | 4..191 | 36..214 | 516 | 51.6 | Plus |
| Cdc42-PA | 191 | CG12530-PA | 4..191 | 36..214 | 516 | 51.6 | Plus |
