BS32954.complete Sequence
1118 bp assembled on 2014-01-22
GenBank Submission: KX803367
> BS32954.complete
GAAGTTATCAGTCGACATGTGCAGCATCAGTCAATTGCAGTGGATACACA
ATCGCTTATCGATTGGAGCCCAAAACAAAGAGCCCATGGACGTGCGCATC
GACATGCCGTGGGGTTATGTGGTGGGCAAGTGGTACGGCAATCGGCAGGT
ACGACCCATCCTGGCGCTGCATGGCTGGCTGGACAACCTGGGCACGTGGG
ACAAATTGCTGCCCCTGCTACCGAAGCACCTGGGAGTGCTGTGCATCGAC
CTGCCCGGCCACGGATACTCCTCGAAGCTGCCCGAGGGGATTGCCTACCA
CTTCGTGGACTACCTGTGCGTGATCCTGCGCGTAATGGAGGAGTACCGCT
GGCAGAAGGTGTCCCTGATGGCCCACTCAATGAGCGCCATGCTGTGCTTC
GTATTCGCTTCGCTGTACCCACATCGCACCGACATGTTGGTCAGCATAGA
TATAGTGAAGACCCGCTATAGGAAGCCCCCCTCGCAGATCGACTATCTGC
GCAAGAACATCGAGGGCTACATTGTGGAGGACGAGCGATTTGCGAATTCC
AAGCGCCAGGAGCCGCCGGCCTATACCTACACAGAGATGGAGCAGGTCCT
GTACAAAGGCACCGACTACTCGGTGGAGCTGGAGAACTGCCGCCACATCC
TGGAGCGCAACATCAGCCGTTCCACCAAGTTCCCGGCCAAGTTCTTCTTC
TCGCGCGACGGTCGCTGCAAGTACTACACGGAGTTCCATACGAGTCCTCC
CTTCGCCGCTGAACTGGCCAGGACCATCAAGAATGTGCCCTACTGCGTGA
TCAAGGGCTCCGAGTCGAACTACATAGACGAGCAGAGCGACGAGGTGATT
GGCATCCTCAGGGAGAACAACCCGCACTTCGAGCTCCACGAAGTGCAGGG
CACCCACCACGTTCACCTCAACAATGCGCAGGGTGTGGCGGCCGTCATTA
ATCCCTTCATTCTGCACCACCGCCCACCGCATCTGGAGAACTGGACGGTG
GACGGGACGGATGAGACGCTGCCCGAGGTCGTCAAGGAATTCAAGTTGGC
CGTGGAGGATTCAGAGAATGTCAAGCGGAGGAAGAGAAAAAGCAACCTAT
AGAAGCTTTCTAGACCAT
BS32954.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:48:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5707-RC | 1086 | CG5707-PC | 1..1086 | 17..1102 | 5430 | 100 | Plus |
| CG5707-RB | 1086 | CG5707-PB | 1..1086 | 17..1102 | 5430 | 100 | Plus |
| CG5707-RA | 1074 | CG5707-PA | 52..1074 | 80..1102 | 5115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:48:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5707-RC | 1714 | CG5707-RC | 400..1486 | 16..1102 | 5435 | 100 | Plus |
| CG5707-RB | 1477 | CG5707-RB | 163..1249 | 16..1102 | 5435 | 100 | Plus |
| CG5707-RA | 1533 | CG5707-RA | 283..1305 | 80..1102 | 5115 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:48:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2189388..2190410 | 1102..80 | 5115 | 100 | Minus |
| 3L | 28110227 | 3L | 2191141..2191205 | 80..16 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:48:56 has no hits.
BS32954.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-22 13:05:48 Download gff for
BS32954.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5707-RB | 164..1249 | 17..1102 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:23:51 Download gff for
BS32954.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5707-RB | 164..1249 | 17..1102 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:23:51 Download gff for
BS32954.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2189388..2190410 | 80..1102 | 100 | <- | Minus |
| 3L | 2191142..2191204 | 17..79 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-22 13:05:48 Download gff for
BS32954.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2189388..2190410 | 80..1102 | 100 | <- | Minus |
| arm_3L | 2191142..2191204 | 17..79 | 100 | | Minus |
BS32954.pep Sequence
Translation from 16 to 1101
> BS32954.pep
MCSISQLQWIHNRLSIGAQNKEPMDVRIDMPWGYVVGKWYGNRQVRPILA
LHGWLDNLGTWDKLLPLLPKHLGVLCIDLPGHGYSSKLPEGIAYHFVDYL
CVILRVMEEYRWQKVSLMAHSMSAMLCFVFASLYPHRTDMLVSIDIVKTR
YRKPPSQIDYLRKNIEGYIVEDERFANSKRQEPPAYTYTEMEQVLYKGTD
YSVELENCRHILERNISRSTKFPAKFFFSRDGRCKYYTEFHTSPPFAAEL
ARTIKNVPYCVIKGSESNYIDEQSDEVIGILRENNPHFELHEVQGTHHVH
LNNAQGVAAVINPFILHHRPPHLENWTVDGTDETLPEVVKEFKLAVEDSE
NVKRRKRKSNL*
BS32954.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:53:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5707-PC | 361 | CG5707-PC | 1..361 | 1..361 | 1950 | 100 | Plus |
| CG5707-PB | 361 | CG5707-PB | 1..361 | 1..361 | 1950 | 100 | Plus |
| CG5707-PA | 357 | CG5707-PA | 12..357 | 16..361 | 1841 | 98.6 | Plus |
| CG15879-PA | 342 | CG15879-PA | 8..319 | 25..335 | 877 | 49.7 | Plus |
| CG5704-PB | 335 | CG5704-PB | 12..316 | 26..333 | 799 | 49.2 | Plus |
