Clone BS32956 Report

Search the DGRC for BS32956

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:329
Well:56
Vector:pDNR-Dual
Associated Gene/TranscriptRab8-RB
Protein status:BS32956.pep: gold
Sequenced Size:551

Clone Sequence Records

BS32956.complete Sequence

551 bp assembled on 2014-01-22

GenBank Submission: KX802538

> BS32956.complete
GAAGTTATCAGTCGACATGGGTTCCGACCAAACAGGTATCGATTTTAAAA
TTAGAACAATTGAATTAGATAACAAGAAGATTAAGCTGCAGATATGGGAC
ACTGCCGGCCAGGAGCGTTTTCGCACAATCACCACGGCCTATTACAGAGG
TGCCATGGGCATCATGCTGGTATATGACATAACCCAAGAAAAGTCCTTCG
AGAACATCAAAAACTGGATCAGGAATATCGAGGAAAATGCGTCCGCCGAT
GTCGAGAAAATGCTGCTGGGAAACAAGTGCGAATTGACCGATAAGCGACA
GGTTTCAAAAGAGCGCGGCGAACAATTGGCCATCGAGTATGGCATCAAGT
TCATGGAGACCTCCGCGAAGGCCAGCATTAACGTGGAAGAAGCCTTCCTC
ACCCTAGCCAGTGATATCAAAGCGAAAACGGAAAAGCGAATGGAGGCGAA
CAACCCACCCAAGGGCGGCCATCAGCTGAAACCGATGGACAGTCGGACGA
AGGACAGTTGGTTGTCCAGGTGCAGTCTGCTTTGAAAGCTTTCTAGACCA
T

BS32956.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:49:06
Subject Length Description Subject Range Query Range Score Percent Strand
Rab8-RB 519 CG8287-PB 1..519 17..535 2595 100 Plus
Rab8-RC 624 CG8287-PC 123..624 34..535 2510 100 Plus
Rab8-RA 624 CG8287-PA 123..624 34..535 2510 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:49:07
Subject Length Description Subject Range Query Range Score Percent Strand
Rab8-RB 1068 CG8287-RB 32..551 16..535 2600 100 Plus
Rab8-RC 2043 CG8287-RC 697..1198 34..535 2510 100 Plus
Rab8-RA 2263 CG8287-RA 697..1198 34..535 2510 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:49:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19869101..19869308 303..96 1040 100 Minus
3L 28110227 3L 19868723..19868866 443..300 720 100 Minus
3L 28110227 3L 19868553..19868646 535..442 470 100 Minus
3L 28110227 3L 19869367..19869431 97..33 325 100 Minus
X 23542271 X 20252275..20252409 73..207 315 82.2 Plus
3R 32079331 3R 21114776..21114868 88..180 180 79.6 Plus
Blast to na_te.dros performed on 2014-11-28 14:49:05 has no hits.

BS32956.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-22 13:05:52 Download gff for BS32956.complete
Subject Subject Range Query Range Percent Splice Strand
Rab8-RB 33..550 17..534 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:23:55 Download gff for BS32956.complete
Subject Subject Range Query Range Percent Splice Strand
Rab8-RB 33..550 17..534 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:23:55 Download gff for BS32956.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19869508..19869526 17..35 100   Minus
3L 19868554..19868645 443..534 100 <- Minus
3L 19868724..19868864 302..442 100 <- Minus
3L 19869103..19869307 97..301 100 <- Minus
3L 19869368..19869428 36..96 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-22 13:05:52 Download gff for BS32956.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19862468..19862528 36..96 100 <- Minus
arm_3L 19862608..19862626 17..35 100   Minus
arm_3L 19861654..19861745 443..534 100 <- Minus
arm_3L 19861824..19861964 302..442 100 <- Minus
arm_3L 19862203..19862407 97..301 100 <- Minus

BS32956.pep Sequence

Translation from 16 to 534

> BS32956.pep
MGSDQTGIDFKIRTIELDNKKIKLQIWDTAGQERFRTITTAYYRGAMGIM
LVYDITQEKSFENIKNWIRNIEENASADVEKMLLGNKCELTDKRQVSKER
GEQLAIEYGIKFMETSAKASINVEEAFLTLASDIKAKTEKRMEANNPPKG
GHQLKPMDSRTKDSWLSRCSLL*

BS32956.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:53:15
Subject Length Description Subject Range Query Range Score Percent Strand
Rab8-PB 172 CG8287-PB 1..172 1..172 882 100 Plus
Rab8-PC 207 CG8287-PC 42..207 7..172 851 100 Plus
Rab8-PA 207 CG8287-PA 42..207 7..172 851 100 Plus
Rab10-PA 204 CG17060-PA 43..182 7..146 526 72.1 Plus
RabX4-PA 213 CG31118-PA 42..177 7..141 425 59.6 Plus