BS32956.complete Sequence
551 bp assembled on 2014-01-22
GenBank Submission: KX802538
> BS32956.complete
GAAGTTATCAGTCGACATGGGTTCCGACCAAACAGGTATCGATTTTAAAA
TTAGAACAATTGAATTAGATAACAAGAAGATTAAGCTGCAGATATGGGAC
ACTGCCGGCCAGGAGCGTTTTCGCACAATCACCACGGCCTATTACAGAGG
TGCCATGGGCATCATGCTGGTATATGACATAACCCAAGAAAAGTCCTTCG
AGAACATCAAAAACTGGATCAGGAATATCGAGGAAAATGCGTCCGCCGAT
GTCGAGAAAATGCTGCTGGGAAACAAGTGCGAATTGACCGATAAGCGACA
GGTTTCAAAAGAGCGCGGCGAACAATTGGCCATCGAGTATGGCATCAAGT
TCATGGAGACCTCCGCGAAGGCCAGCATTAACGTGGAAGAAGCCTTCCTC
ACCCTAGCCAGTGATATCAAAGCGAAAACGGAAAAGCGAATGGAGGCGAA
CAACCCACCCAAGGGCGGCCATCAGCTGAAACCGATGGACAGTCGGACGA
AGGACAGTTGGTTGTCCAGGTGCAGTCTGCTTTGAAAGCTTTCTAGACCA
T
BS32956.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:49:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab8-RB | 519 | CG8287-PB | 1..519 | 17..535 | 2595 | 100 | Plus |
Rab8-RC | 624 | CG8287-PC | 123..624 | 34..535 | 2510 | 100 | Plus |
Rab8-RA | 624 | CG8287-PA | 123..624 | 34..535 | 2510 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:49:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab8-RB | 1068 | CG8287-RB | 32..551 | 16..535 | 2600 | 100 | Plus |
Rab8-RC | 2043 | CG8287-RC | 697..1198 | 34..535 | 2510 | 100 | Plus |
Rab8-RA | 2263 | CG8287-RA | 697..1198 | 34..535 | 2510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:49:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19869101..19869308 | 303..96 | 1040 | 100 | Minus |
3L | 28110227 | 3L | 19868723..19868866 | 443..300 | 720 | 100 | Minus |
3L | 28110227 | 3L | 19868553..19868646 | 535..442 | 470 | 100 | Minus |
3L | 28110227 | 3L | 19869367..19869431 | 97..33 | 325 | 100 | Minus |
X | 23542271 | X | 20252275..20252409 | 73..207 | 315 | 82.2 | Plus |
3R | 32079331 | 3R | 21114776..21114868 | 88..180 | 180 | 79.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:49:05 has no hits.
BS32956.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-22 13:05:52 Download gff for
BS32956.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab8-RB | 33..550 | 17..534 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:23:55 Download gff for
BS32956.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab8-RB | 33..550 | 17..534 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:23:55 Download gff for
BS32956.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19869508..19869526 | 17..35 | 100 | | Minus |
3L | 19868554..19868645 | 443..534 | 100 | <- | Minus |
3L | 19868724..19868864 | 302..442 | 100 | <- | Minus |
3L | 19869103..19869307 | 97..301 | 100 | <- | Minus |
3L | 19869368..19869428 | 36..96 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-22 13:05:52 Download gff for
BS32956.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19862468..19862528 | 36..96 | 100 | <- | Minus |
arm_3L | 19862608..19862626 | 17..35 | 100 | | Minus |
arm_3L | 19861654..19861745 | 443..534 | 100 | <- | Minus |
arm_3L | 19861824..19861964 | 302..442 | 100 | <- | Minus |
arm_3L | 19862203..19862407 | 97..301 | 100 | <- | Minus |
BS32956.pep Sequence
Translation from 16 to 534
> BS32956.pep
MGSDQTGIDFKIRTIELDNKKIKLQIWDTAGQERFRTITTAYYRGAMGIM
LVYDITQEKSFENIKNWIRNIEENASADVEKMLLGNKCELTDKRQVSKER
GEQLAIEYGIKFMETSAKASINVEEAFLTLASDIKAKTEKRMEANNPPKG
GHQLKPMDSRTKDSWLSRCSLL*
BS32956.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:53:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab8-PB | 172 | CG8287-PB | 1..172 | 1..172 | 882 | 100 | Plus |
Rab8-PC | 207 | CG8287-PC | 42..207 | 7..172 | 851 | 100 | Plus |
Rab8-PA | 207 | CG8287-PA | 42..207 | 7..172 | 851 | 100 | Plus |
Rab10-PA | 204 | CG17060-PA | 43..182 | 7..146 | 526 | 72.1 | Plus |
RabX4-PA | 213 | CG31118-PA | 42..177 | 7..141 | 425 | 59.6 | Plus |