BS32974.complete Sequence
698 bp assembled on 2014-01-22
GenBank Submission: KX806291
> BS32974.complete
GAAGTTATCAGTCGACATGGCTGCGCCGGTCATTGTCGAGGCCACGGTCA
AGCAAACCGCCACGCTGATCTTCATGCACGGCCTGGGTGATACGGGTCAT
GGCTGGAGCAGTGCCCTAGCCGCCATCCGCCCACCTTTCATGAAAGTCAT
CTGCCCCACGGCGCCCACACAGCCCGTTTCGCTGAACGCCGGCTTCCGCA
TGCCGTCGTGGTTTGACCTGAAGACGCTGGACATCGGTGGGCCCGAGGAC
GAGCCGGGCATCCAGTCGGCGCGTGATAGTGTGCACGGTATGATCCAGAA
GGAGATTAGCGCTGGGATTCCGGCCAATCGCATTGTCCTGGGCGGATTCT
CGCAGGGCGGAGCCTTGGCACTGTACTCGGCACTCACGTACGATCAGCCG
CTGGCCGGCGTGGTGGCCCTATCCTGTTGGCTGCCGCTGCACAAGCAGTT
CCCAGGCGCCAAGGTGAACAGCGATGATGTGCCGATTTTCCAGGCGCATG
GCGACTACGATCCCGTGGTGCCGTACAAATTCGGCCAGCTGAGCGCCAGC
CTGCTCAAGTCGTTCATGAAGAATGTGACGTTCAAGACGTACAGTGGACT
ATCGCACTCGTCGTCCGACGACGAAATGGATGACGTCAAGGACATCATCA
GTAAATGGCAACAGGCAAACAATCATCTGTAGAAGCTTTCTAGACCAT
BS32974.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:49:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18815-RD | 666 | CG18815-PD | 1..666 | 17..682 | 3330 | 100 | Plus |
| CG18815-RE | 699 | CG18815-PE | 1..642 | 17..658 | 3210 | 100 | Plus |
| CG18815-RC | 651 | CG18815-PC | 1..642 | 17..658 | 3210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:49:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18815-RD | 1373 | CG18815-RD | 209..878 | 14..683 | 3350 | 100 | Plus |
| CG18815-RE | 1136 | CG18815-RE | 209..853 | 14..658 | 3225 | 100 | Plus |
| CG18815-RC | 1181 | CG18815-RC | 143..787 | 14..658 | 3225 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:49:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11628960..11629505 | 96..641 | 2730 | 100 | Plus |
| 3L | 28110227 | 3L | 11628451..11628505 | 14..68 | 260 | 98.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:49:31 has no hits.
BS32974.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-22 13:06:02 Download gff for
BS32974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18815-RD | 212..877 | 17..682 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:24:08 Download gff for
BS32974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18815-RD | 212..877 | 17..682 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:24:08 Download gff for
BS32974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11628454..11628501 | 17..64 | 100 | -> | Plus |
| 3L | 11628563..11628594 | 65..96 | 100 | -> | Plus |
| 3L | 11628961..11629504 | 97..640 | 100 | -> | Plus |
| 3L | 11629581..11629598 | 641..658 | 100 | -> | Plus |
| 3L | 11630230..11630253 | 659..682 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-22 13:06:02 Download gff for
BS32974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11621554..11621601 | 17..64 | 100 | -> | Plus |
| arm_3L | 11621663..11621694 | 65..96 | 100 | -> | Plus |
| arm_3L | 11622061..11622604 | 97..640 | 100 | -> | Plus |
| arm_3L | 11622681..11622698 | 641..658 | 100 | -> | Plus |
| arm_3L | 11623330..11623353 | 659..682 | 100 | | Plus |
BS32974.pep Sequence
Translation from 16 to 681
> BS32974.pep
MAAPVIVEATVKQTATLIFMHGLGDTGHGWSSALAAIRPPFMKVICPTAP
TQPVSLNAGFRMPSWFDLKTLDIGGPEDEPGIQSARDSVHGMIQKEISAG
IPANRIVLGGFSQGGALALYSALTYDQPLAGVVALSCWLPLHKQFPGAKV
NSDDVPIFQAHGDYDPVVPYKFGQLSASLLKSFMKNVTFKTYSGLSHSSS
DDEMDDVKDIISKWQQANNHL*
BS32974.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:53:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18815-PD | 221 | CG18815-PD | 1..221 | 1..221 | 1162 | 100 | Plus |
| CG18815-PE | 232 | CG18815-PE | 1..216 | 1..216 | 1128 | 99.5 | Plus |
| CG18815-PC | 216 | CG18815-PC | 1..214 | 1..214 | 1124 | 100 | Plus |
| CG18815-PB | 216 | CG18815-PB | 1..214 | 1..214 | 1124 | 100 | Plus |
| CG18815-PA | 216 | CG18815-PA | 1..214 | 1..214 | 1124 | 100 | Plus |
